Locus 13321

Sequence ID	dm3.chrX
Location	5,790,088 – 5,790,163
Length	75
Max. P	0.764483

overview

Window 6

Location	5,790,088 – 5,790,163
Length	75
Sequences	5
Columns	78
Reading direction	forward
Mean pairwise identity	79.76
Shannon entropy	0.35742
G+C content	0.47171
Mean single sequence MFE	-21.22
Consensus MFE	-13.64
Energy contribution	-13.96
Covariance contribution	0.32
Combinations/Pair	1.20
Mean z-score	-1.75
Structure conservation index	0.64
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.62
SVM RNA-class probability	0.764483
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 5790088 75 + 22422827
---GUCUGUCUUCCAGUCUGAGCUAUGUGGGUACAGUUGUGCUCACAACGAUAGUGCCCACGAUUGAUUGCAAAAAAG
---(((.(((....(((....)))..((((((((.(((((....)))))....))))))))))).))).......... ( -21.80, z-score =  -1.79, R)
>droSim1.chrX 4529091 74 + 17042790
---GUCUGUCUUCCAGUCUGAGCUAUGUGGGUACAGUUGUGCUCACAACGUUAGUGCCCGCCAUUCAUUGAAAAAAU-
---(.(((.....))).)((((....((((((((.(((((....)))))....))))))))..))))..........- ( -20.10, z-score =  -2.04, R)
>droSec1.super_4 5210119 74 - 6179234
---GUCUGUCUUCCAGUAUGGGCUAUGUGGGUACAGUUGUGCUUACAACUAUAGUGCCCGCCAUUCAUUAAGAAAAU-
---.(((((((........))))...((((((((((((((....))))))...)))))))).........)))....- ( -20.80, z-score =  -1.69, R)
>droYak2.chrX 14649314 76 + 21770863
UCCGUC-GUCUUCCAGACUGAGCUAUGUGCGUACAGUUGCGCUCACAACGCUAGUGCUCUUCACUCAAGCGUAAAUU-
((.(((-........))).))....((.(((((....))))).))..(((((((((.....))))..))))).....- ( -18.20, z-score =  -0.54, R)
>droEre2.scaffold_4690 3136789 74 + 18748788
---GUCUGUCUUCCAGACUGAGCCAUGUGGGUACAGUUGUGCUCACAACGGCAGUGCUUCUCAUUCAAGCGUAAAUC-
---(((((.....)))))...(((.(((((((((....)))))))))..)))...((((.......)))).......- ( -25.20, z-score =  -2.69, R)
>consensus
___GUCUGUCUUCCAGUCUGAGCUAUGUGGGUACAGUUGUGCUCACAACGAUAGUGCCCGCCAUUCAUUCAAAAAAU_
...................((((..(((((((((....)))))))))((....))))))................... (-13.64 = -13.96 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:06 2011