| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,787,957 – 5,788,062 |
| Length | 105 |
| Max. P | 0.892671 |
| Location | 5,787,957 – 5,788,062 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 84.64 |
| Shannon entropy | 0.25408 |
| G+C content | 0.39838 |
| Mean single sequence MFE | -29.38 |
| Consensus MFE | -20.16 |
| Energy contribution | -21.20 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5787957 105 - 22422827 GUGUGAUAAAUUAUCGCUUGCGUUUCGCAAAUAUUUAAAUUUAU-------GUGAAACGUGAGGGGAUGCAGUUUAUUAUACAU-UUCGUGGCGGAACUGCU-----GUUACAAGGGA ((((((((((((.((.((..(((((((((..............)-------))))))))..)).))....))))))))))))..-...(((((((.....))-----)))))...... ( -34.94, z-score = -4.47, R) >droEre2.scaffold_4690 3134719 109 - 18748788 --GGGAUAAAUUACCGCUUGCGUUGGGGAAAUGUUUAAAUUUAU-------GGGAAACGUUAGGGGUGGCAGUUUAUUACACAGUUUUGUUGCGGAACUGCUUGGGAAUUGCAGGGGA --.........((((.((.(((((....((((......))))..-------....))))).)).))))(((((((......((((((((...)))))))).....)))))))...... ( -26.80, z-score = -1.54, R) >droYak2.chrX 14647142 110 - 21770863 --CUGAUAAAUUAUCGCUUGCGUUGGGGAAAUAUUCAAAUUUAUGUGAAACGUGAAACGUGAGGGGAUGCAGUUUAUUGCACAA-UUUGUUGCGGAACUGCU-----GUUGCAGGGGA --...........((.((((((..........((((...(((((((..........))))))).))))(((((((...(((...-.....))).))))))).-----..)))))).)) ( -26.10, z-score = -0.70, R) >droSec1.super_4 5208027 105 + 6179234 GUAUGAUAAAUUAUCGCUUGCGUUUCGCAAAUAUUUAAAUUUAU-------GUGAAACGUGAGGGGAUGCAGUUUAUUACACCG-UUUGUUGCGGAACUGCU-----GUUACAAGGGA ((.(((((((((.((.((..(((((((((..............)-------))))))))..)).))....))))))))).))(.-(((((.((((.....))-----)).))))).). ( -30.74, z-score = -2.75, R) >droSim1.chrX 4526990 105 - 17042790 GUAUGAUAAAUUAUCGCUUGCGUUUUGCAAAUAUUUAAAUUUAU-------GUGAAACGUGAGGGGAUGCAGUUUAUUACACCG-UUUGUUGCGGAACUGCU-----GUUACAAGGGA ((.(((((((((.((.((..(((((..((..............)-------)..)))))..)).))....))))))))).))(.-(((((.((((.....))-----)).))))).). ( -28.34, z-score = -2.16, R) >consensus GUAUGAUAAAUUAUCGCUUGCGUUUCGCAAAUAUUUAAAUUUAU_______GUGAAACGUGAGGGGAUGCAGUUUAUUACACAG_UUUGUUGCGGAACUGCU_____GUUACAAGGGA .............((.((..((((((((.......................))))))))..)).))..(((((((...(((......)))....)))))))................. (-20.16 = -21.20 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:05 2011