| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,344,039 – 10,344,131 |
| Length | 92 |
| Max. P | 0.994448 |
| Location | 10,344,039 – 10,344,131 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 66.14 |
| Shannon entropy | 0.65984 |
| G+C content | 0.31718 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -13.37 |
| Energy contribution | -11.97 |
| Covariance contribution | -1.40 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.70 |
| SVM RNA-class probability | 0.994448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10344039 92 + 23011544 -------------------AGUUAAGUGGUGGUAAUUAAUCAUUCAACUUAUGAGGAUUAUUUCUUAAAGGCCU-CUGGCUCGGAAAUAGUCUGAACCUUA---UUGUACACGCG -------------------......((((..((((....((((.......))))(((((((((((....((((.-..)))).))))))))))).....)))---)..).)))... ( -20.80, z-score = -1.14, R) >droSim1.chr2L 10132937 92 + 22036055 -------------------AGAUAAGUGGUGGUAAUUAAUUAUUCAACUUAUGAAGAUUAUUUCUUAAAGGCCU-CUGGCUCGGAAAUGGUCUGAACUUUG---UUGCACACGCG -------------------......((((((((((....)))).((((......(((((((((((....((((.-..)))).))))))))))).......)---)))))).))). ( -21.52, z-score = -1.48, R) >droSec1.super_3 5769250 92 + 7220098 -------------------AGAUAAGUGGUGGUAAUUAAUUAUUCAACUUAUGAGGAUUAUUUCUUAAAGGCCU-CUGGCUCGGAAAUAGUCUGAACUUUA---UUGUACACGCG -------------------......((((..((((........(((.....)))(((((((((((....((((.-..)))).))))))))))).....)))---)..).)))... ( -19.50, z-score = -1.03, R) >droYak2.chr2L 13022916 91 + 22324452 -------------------AGUUAAGUGAUACAAAUUAAUUAUUCAACUUAUGAGGACUAUUUCUUAAAGGCCU--UGGCUCGGAAAUAGUCUGAACAUUA---UUGUACAUGAG -------------------.(((.((((((........)))))).)))(((((.(((((((((((....(((..--..))).)))))))))))..(((...---.))).))))). ( -22.40, z-score = -2.80, R) >droEre2.scaffold_4929 10951330 93 + 26641161 -------------------AGUUAGGUGGUGCAAAUUAAUUAUUCAACCUAUGAGGAUUAUUUCAUAAAGGCCUUCUGGCUCGGAAAUAGUCUGAAAUUUA---UUGUACAUGCG -------------------......(((((((((.........(((.....)))((((((((((.....((((....))))..))))))))))........---)))))).))). ( -22.10, z-score = -1.72, R) >dp4.chr2 14254300 105 + 30794189 --------AACUAGAUUUAAGGUAA-UACAAACAAUUGAUUAUUCAGCCUAUGACGGAUAUUUCAUAAAGGCUU-AAAGCUUGGAAAUAUUUGGAACUUUACAUUUUUAAAUGUG --------....((((.((((((..-.........((((....)))).......((((((((((....((((..-...)))).))))))))))..)))))).))))......... ( -18.10, z-score = -1.55, R) >droPer1.super_0 5637176 105 - 11822988 --------AACUAGAUUUAAGGUAA-UACAAACAAUUGAUUAUUCAGCCUAUGACGGAUAUUUCAUAAAGGCUU-AAAGCUUGGAAAUAUUUGGAACUUUACAUUUUUAAAUGUG --------....((((.((((((..-.........((((....)))).......((((((((((....((((..-...)))).))))))))))..)))))).))))......... ( -18.10, z-score = -1.55, R) >droVir3.scaffold_12963 1046020 106 + 20206255 -----AAAAUGUUAAUUUAGUUUUUGUGAAGCGAAUUGACUAUUCAACUUAUGAUUACUAUUUCAUAAAGGCUU-CUGGCUGGGAAAUAUUAUGAACGGUU---UUAUGUGUAAA -----..((((((..(((((((.....(((((((((.....))))...((((((........))))))..))))-).))))))).))))))..........---........... ( -16.90, z-score = -0.21, R) >droMoj3.scaffold_6500 27777107 103 + 32352404 -----AAAAUAUUGUUUUG--UUUAACGAGUCAAACUGAGUGUUCAACUUAUGAUUAUUAUUUCGUAAAGGUUU--UGGCUGGGAAAUAAUAUGAAUUGAU---UUAUAUGUAAA -----...((((((((((.--.....(.(((((((((((((.....))))((((........))))...)).))--))))).)))))))))))........---........... ( -15.80, z-score = -0.24, R) >droGri2.scaffold_15126 6000891 110 - 8399593 CGUAUGUAAAACCAAUUAG-UUUUAAUGCAUCGAAUUGAGGAUUCAACUUAUGACUAUUAUUUCGCAAAGGCUU-UUAGCUGGGAAAUAUUAUGAAUUGUU---UUAUAUACGUA ((((((((((((....(((-((.(((((.(((........))).))..))).))))).((((((.(...(((..-...))).))))))).........)))---))))))))).. ( -23.60, z-score = -2.01, R) >consensus ___________________AGUUAAGUGGUGCAAAUUAAUUAUUCAACUUAUGAGGAUUAUUUCAUAAAGGCCU_CUGGCUCGGAAAUAGUCUGAACUUUA___UUGUACAUGCG ......................................................((((((((((.....((((....))))..))))))))))...................... (-13.37 = -11.97 + -1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:56 2011