| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,778,782 – 5,778,883 |
| Length | 101 |
| Max. P | 0.723829 |
| Location | 5,778,782 – 5,778,883 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.29 |
| Shannon entropy | 0.38779 |
| G+C content | 0.40428 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -14.03 |
| Energy contribution | -14.15 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5778782 101 - 22422827 UAUGUACGCCAUAUAGGGCGUAUCUUAUCCAAAGCCCACAACCU---------GCGUCAUU------AUGCGAUAAUUGUAAUUAUAACUGACGCAAAACUAGAUGAAUUUCGAAC- ...(((((((......)))))))....................(---------((((((((------(((..((....))...))))).)))))))....................- ( -20.10, z-score = -1.21, R) >droSim1.chrX 4518256 100 - 17042790 UGUGUGCGCCAUAUAGGGCGUAUCUUAUCCAAA-CCCACAACCU---------GCGUCAUU------AUGCGAUAAUUGUAAUUAUAACUGACGCAAAACUAGAUGAAUUUCAAAC- ...(((((((......)))))))..........-.........(---------((((((((------(((..((....))...))))).)))))))....................- ( -20.10, z-score = -1.02, R) >droSec1.super_4 5199087 101 + 6179234 UGUGUGCGCCAUAUAGGGCGUAUCUUAUCCAAACCCCACAACCU---------GCGUCAUU------AUGCGAUAAUUGUAAUUAUAACUGACGCAAAACUAGAUGAAUUUCAAAC- ...(((((((......)))))))....................(---------((((((((------(((..((....))...))))).)))))))....................- ( -20.10, z-score = -1.07, R) >droYak2.chrX 14637804 101 - 21770863 UAUGUGCGCCAUAUAGGGCGUAUCUUAUCCAAA-CCCCCAACCU---------GCGUCACG------AUGCUAUAAUUGUAAUUAUAACUGACGCAAAACUAGCUCAAUUUAUAAAC ...(((((((......)))))))..........-.........(---------((((((..------..(.((((((....)))))).))))))))..................... ( -20.00, z-score = -1.71, R) >droEre2.scaffold_4690 3125647 100 - 18748788 UAUGUGCGCCAUAUAGGGCGUAUCUUAUCCAAA-CCAUCAACCU---------GCGUCAUU------AUGCGAUAAUUGUAAUUACAACUGACGCAAAACUAGAUGAAUUUGGAAU- ...(((((((......)))))))....((((((-.((((....(---------((((((..------.((..((.......))..))..)))))))......))))..))))))..- ( -27.90, z-score = -3.29, R) >droAna3.scaffold_12929 77349 111 - 3277472 UACGUGAGUGCCCCAUGGCGUAUCUUAUCCAAC-CCCCCAACCCAGACCCUUAACAUUAUUUGCGUCACGCUGUCGCACCAAUUUCAACUGACGCAAACCGAAAUAUAUGUU----- .((....))(((....)))..............-.........................(((((((((.(.((............)).))))))))))..............----- ( -16.60, z-score = -0.35, R) >consensus UAUGUGCGCCAUAUAGGGCGUAUCUUAUCCAAA_CCCACAACCU_________GCGUCAUU______AUGCGAUAAUUGUAAUUAUAACUGACGCAAAACUAGAUGAAUUUCAAAC_ ...(((((((......)))))))..............................((((((.........(((((...)))))........))))))...................... (-14.03 = -14.15 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:03 2011