Locus 13313

Sequence ID	dm3.chrX
Location	5,749,051 – 5,749,131
Length	80
Max. P	0.848537

overview

Window 2

Location	5,749,051 – 5,749,131
Length	80
Sequences	4
Columns	92
Reading direction	forward
Mean pairwise identity	62.89
Shannon entropy	0.57012
G+C content	0.30752
Mean single sequence MFE	-12.98
Consensus MFE	-7.35
Energy contribution	-7.47
Covariance contribution	0.13
Combinations/Pair	1.22
Mean z-score	-1.07
Structure conservation index	0.57
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.90
SVM RNA-class probability	0.848537
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 5749051 80 + 22422827
GUAAUAUUUCAUUGAAAAUGGCUUCAUAACUCUGUGUUUAUUAGUACGGAAUAUUUCUAUGAUUCUAUGCCA---AUAUUUCU---------
..........((((...((((..(((((..((((((........)))))).......)))))..))))..))---))......--------- ( -10.60, z-score =  -0.49, R)
>droEre2.scaffold_4690 3095383 85 + 18748788
-------UUCAUUAAAAGGGAUCCCAUGACACCGUGCAUGUUACUACAGAAUAUUUGUACAGUUCUGUGCCACGUGAAUUGCUUAUGGUUCU
-------..........((....))..((.((((((((..((((((((((((.........))))))))....))))..)))..))))))). ( -18.10, z-score =  -0.33, R)
>droSim1.chrX 4491573 64 + 17042790
UUAAUAUUUCAUUGAAAAUGCCUU----------------UUAGUACAGAAUAUUUCGUUGAUUCUGUGCCA---AUAUUUCU---------
........................----------------...(((((((((.........)))))))))..---........--------- (  -9.50, z-score =  -1.63, R)
>droSec1.super_4 5163494 76 - 6179234
GUAAUAUUUAAUUGAAAAUGGCUCCGUAACUAUGU----AUUAGUACAGAAUAUUUCGUUGAUUCUGUGCCA---AUAUUUCU---------
.............((((.((((......((((...----..))))(((((((.........)))))))))))---...)))).--------- ( -13.70, z-score =  -1.82, R)
>consensus
GUAAUAUUUCAUUGAAAAUGGCUCCAUAACUCUGU____AUUAGUACAGAAUAUUUCGAUGAUUCUGUGCCA___AUAUUUCU_________
...........................................(((((((((.........)))))))))...................... ( -7.35 =  -7.47 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:55 2011