| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,741,131 – 5,741,186 |
| Length | 55 |
| Max. P | 0.999711 |
| Location | 5,741,131 – 5,741,186 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 73.48 |
| Shannon entropy | 0.50583 |
| G+C content | 0.37638 |
| Mean single sequence MFE | -13.20 |
| Consensus MFE | -9.69 |
| Energy contribution | -10.49 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.50 |
| Mean z-score | -3.45 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 4.23 |
| SVM RNA-class probability | 0.999711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5741131 55 + 22422827 CCUCCGUUUUAUGCAGUGAAAUUAAAACCACUGCGUAAUGGAAUAUGAAUAUCAA ..(((((..(((((((((..........))))))))))))))............. ( -16.10, z-score = -4.81, R) >droSim1.chrX 4482985 55 + 17042790 CCUCCGUUUUAUGCAGUGAAAUUAAAACCACUGCAUAAUGGAAUAUGAAUAUCAA ..(((((..(((((((((..........))))))))))))))............. ( -16.50, z-score = -5.11, R) >droSec1.super_4 5155429 55 - 6179234 CCUCCGUUUUAUGCAGUGAAAUUAAAACCACUGCAUAAUCGAAUAUGAAUAUCAA ....((..((((((((((..........)))))))))).)).............. ( -14.10, z-score = -5.17, R) >droYak2.chrX 19039830 55 - 21770863 CCUCCGGUUGAUGCAGUGAAAUGAAAACCACUGCGUAAUGGAAUAUGAAUAUCAU ..((((....((((((((..........))))))))..))))............. ( -15.00, z-score = -3.23, R) >droEre2.scaffold_4690 3088689 55 + 18748788 CCUCCAUUUUAUGUAGUGCUAUUAAAACCACUGCGUAAUGGAAUAUGAAUAUCAA ..(((((..(((((((((..........))))))))))))))............. ( -13.70, z-score = -3.66, R) >dp4.chrXL_group1a 7089620 54 - 9151740 UUCCCGUUCCACCCACUGAACUUAUA-CGCUUCUCUAACGGGAUACAUGUAGCCA .....((((........))))(((((-.(..((((....))))..).)))))... ( -8.50, z-score = -0.99, R) >droPer1.super_28 615513 54 - 1111753 UUUCCGUUCCACACAUUGAACUUAUA-CGCUUCUCUAACGGGAUACAUGUAGCCA .....((((........))))(((((-.(..((((....))))..).)))))... ( -8.50, z-score = -1.21, R) >consensus CCUCCGUUUUAUGCAGUGAAAUUAAAACCACUGCGUAAUGGAAUAUGAAUAUCAA ..((((((..((((((((..........))))))))))))))............. ( -9.69 = -10.49 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:53 2011