| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,740,517 – 5,740,649 |
| Length | 132 |
| Max. P | 0.630748 |
| Location | 5,740,517 – 5,740,649 |
|---|---|
| Length | 132 |
| Sequences | 4 |
| Columns | 149 |
| Reading direction | reverse |
| Mean pairwise identity | 57.25 |
| Shannon entropy | 0.62015 |
| G+C content | 0.33228 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -10.54 |
| Energy contribution | -11.29 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5740517 132 - 22422827 ----------AUUUCACUAU--AUUC---GUUUAAUUGCAU--UUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUCUGGGAAAAUUUAACAGCGGGCUUAAAGUAUAUUACAAUGCUCUCUUUUAAGCUUUUGCUCUAUAUUUUAA ----------..........--....---(((.((((...(--(((((.(((((.((((((......))))))))))).)))))))))).)))((((((((((((((((......))))).....)))))))..))))........... ( -31.40, z-score = -2.79, R) >droAna3.scaffold_12916 11199504 136 + 16180835 AUUUUAUAUAAUAUGAUCAUUGAUUUAAAGUUUUAGUACAUAGUACUUUAUGUAAUUUCAAAUAUGCAUAAUAAUGAAAGGCAUACCUUAAACAUUACCUUUAACACUCCUUGCAAAAUUCGGUUAUUAAUGAGGG------------- ................((((((((....((((((..(((((((....)))))))...........(((........(((((................))))).........))))))))).....))))))))...------------- ( -17.42, z-score = 0.68, R) >droSec1.super_4 5154837 108 + 6179234 ----------AAUUCACCAU--GCUC---GUUUAAUUGCAU--UUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUAUGGGAACAUUUAACAGCGGGUUUAACGGCCAUAACAAUGCAAGUAU------------------------ ----------.........(--((.(---((((((.((..(--(((((.(((((.((((((......))))))))))).)))))))).))))..)))(((......)))........))).....------------------------ ( -27.50, z-score = -1.14, R) >droSim1.chrX 4482386 108 - 17042790 ----------AAAUCACCAU--GCUC---GUUUAAUUGCAU--UUCCAAAUGCAACAUUGCGUAUGAGCAAUGUGCAUAUGGGAACAUUUAACAGCGGGUAUAACGGCCAUAACAAUGCAAGUAU------------------------ ----------........((--((((---((((((.((..(--(((((.(((((.((((((......))))))))))).)))))))).))))..)))))))).......................------------------------ ( -31.40, z-score = -2.27, R) >consensus __________AAAUCACCAU__ACUC___GUUUAAUUGCAU__UUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUAUGGGAACAUUUAACAGCGGGUUUAACGGCCAUAACAAUGCAAGUAU________________________ .............................(((...((((....(((((.(((((.((((((......))))))))))).)))))..........))))....)))............................................ (-10.54 = -11.29 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:52 2011