| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,329,697 – 10,329,811 |
| Length | 114 |
| Max. P | 0.938595 |
| Location | 10,329,697 – 10,329,811 |
|---|---|
| Length | 114 |
| Sequences | 9 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 69.06 |
| Shannon entropy | 0.63530 |
| G+C content | 0.39299 |
| Mean single sequence MFE | -28.16 |
| Consensus MFE | -14.22 |
| Energy contribution | -12.04 |
| Covariance contribution | -2.18 |
| Combinations/Pair | 1.81 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10329697 114 + 23011544 GUAUUGGUCAGCAUCACAAAUGAUAUAUUUUCGUUGGCUAUACGUUUUGUAGUCGA--ACGUGUCCGGUGGCAAUUGACGUUCGUCAUGAGACGGCUUUGGAUGCUUC---GUUUUCAC ((((.(((((((((((....))))........)))))))))))....((....(((--(.((((((((.(((...((((....)))).......))))))))))))))---)....)). ( -28.20, z-score = 0.01, R) >droSim1.chr2L 10117362 114 + 22036055 GUAUUGGUCAGCAUCACAAAUGAUAUAUUUUCGUUGGCUAUACGUUUUGUAGUCGA--ACGUGUCCGGUGGCAACUGACGUUCGUCAUGCGACGGCUUUGGAUGCUUC---GUUUUCAC .........((((((.((((...........(((((((((((.....))))))).)--))).(.(((.(.(((..((((....))))))).)))))))))))))))..---........ ( -29.60, z-score = -0.12, R) >droSec1.super_3 5754921 114 + 7220098 GUAUUGGUCAGCAUCACAAAUGAUAUAUUUUCGUUGGCUAUACGUUUUGUAGUCGA--ACGUGUCCGGUGGCAACUGACGUUCGUCAUGCGACGGCUUUGGAUGCUUC---GUUUUCAC .........((((((.((((...........(((((((((((.....))))))).)--))).(.(((.(.(((..((((....))))))).)))))))))))))))..---........ ( -29.60, z-score = -0.12, R) >droYak2.chr2L 13008516 111 + 22324452 GUACUGUUCAGCAUCACAAAU---AUAUUUUCGUUGGCUAUACGUUUUGUAGUCGA--ACGUGUCCGGUGGCAACUGGCGCUCGUCAUGUGACGGUUUUGGAUGCUUC---GUUUUAAC .........((((((.((((.---........((((((((((.....))))))).)--))(((.(((((....))))))))(((((....))))).))))))))))..---........ ( -32.20, z-score = -1.57, R) >droEre2.scaffold_4929 10936834 114 + 26641161 GUACUGCUCAUCAUCACAAAUUAUAUAUUUUCGUUGGCUAUACGUUUUGUAGUCGA--ACGUGUCUGGUGGCAACUGGCGUUCGUCAUGUGACGGCUUUGCAUGCUUC---GUUUUUAU (((.(((.(((((.(((((((.....))))..((((((((((.....))))))).)--)))))..))))))))....(((.(((((....)))))...))).)))...---........ ( -25.70, z-score = -0.10, R) >droAna3.scaffold_12916 14162930 114 + 16180835 AUAACUUUCAGCAUCGGAAUUUAAAUUUUUCUUUUGAUUACAUAUCUUGUAAUCAA--AUGUGUCCGGUGGUAACUGUCUUUCAUCAUGAGACGGUUUUUGAUGUUUA---CUUUUUGU ..(((..(((((((((((..............((((((((((.....)))))))))--)....)))))))..(((((((((.......))))))))).)))).)))..---........ ( -29.17, z-score = -3.81, R) >dp4.Unknown_group_340 2223 114 - 16629 AUAAGUUUCAGUUUCACUUAGUAUAUAUUUUUGUUGAUUACAUUUUUUAUAGUCAA--AUUUAUCAAGUGGUAGCUGUCGGUCGUCAUGUGAUGACUUUCGAGACUUA---AUUUUUGU .((((((((((((((((((.(((..........(((((((.(.....).)))))))--...))).)))))).))))(..(((((((....)))))))..)))))))))---........ ( -27.62, z-score = -3.58, R) >droPer1.super_1 1393473 114 + 10282868 AUAAGUUUCAGUUUCACUUAGUAUAUAUUUUUGUUGAUUACAUUUUUUAUAGUCAA--AUUUAUCAAGUGGUAGCUGUCGGUCGUCAUGUGAUGACUUUCGAGACUUA---AUUUUUGU .((((((((((((((((((.(((..........(((((((.(.....).)))))))--...))).)))))).))))(..(((((((....)))))))..)))))))))---........ ( -27.62, z-score = -3.58, R) >droVir3.scaffold_13049 8778648 119 - 25233164 UUAUGCGUAGGCAGCUCUCCCGAUCCGGUUUUUGCGGUCAAAGCUGUUGUUAUUGAUAAUUCCGCCGAUAAUGAUGUUUUAUUGUUUUUGUAAAGGUGUCGCCGUUCAUACGUGUUUGC ..((((((((((((((..(((((........))).))....))))))).....(((......((((.((((.((((......)))).))))...)))).......)))))))))).... ( -23.72, z-score = 0.92, R) >consensus GUAUUGGUCAGCAUCACAAAUGAUAUAUUUUCGUUGGCUAUACGUUUUGUAGUCGA__ACGUGUCCGGUGGCAACUGUCGUUCGUCAUGUGACGGCUUUGGAUGCUUC___GUUUUUAC .........((((((...................((((((.........))))))......((((..(((((...........)))))..))))......))))))............. (-14.22 = -12.04 + -2.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:55 2011