| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,723,862 – 5,723,963 |
| Length | 101 |
| Max. P | 0.784629 |
| Location | 5,723,862 – 5,723,963 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 74.78 |
| Shannon entropy | 0.46746 |
| G+C content | 0.50035 |
| Mean single sequence MFE | -29.35 |
| Consensus MFE | -17.20 |
| Energy contribution | -17.70 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5723862 101 - 22422827 UUCACGCCCACCUUGUGGCAAGCUUAUGUUUUAGAUGAUUUACACCCCAUAAGGUUGGCCAUUAUGGUAAUGAAGCGUCUGGAGCGACGAAGUGGGACGAC ....(((((((.((((.((..((....))((((((((.((((....((((((((....)).))))))...)))).)))))))))).)))).))))).)).. ( -35.00, z-score = -3.04, R) >droAna3.scaffold_13117 1158349 80 - 5790199 ------------UAUUCUCCUUCUUGUGUUUUUGAUGAUUUACACUCCAUAAGGCUAACCAUUAUGCUAAUGAAGCGCCCGGGGCGGGGGCA--------- ------------..(((........((((............))))..(((((((....)).))))).....)))((.((((...)))).)).--------- ( -15.80, z-score = 1.34, R) >droEre2.scaffold_4690 3071879 76 - 18748788 -----------UGCUCGCCCAGCUUAUGUUUCGGAUGAUUUACACCCCAUAAGGUUGGCCAUUAUGGUAAUGAAGCGUCGGGA-CGAC------------- -----------...((((((.....(((((((((.((.....))))((((((((....)).))))))....))))))).))).-))).------------- ( -20.90, z-score = -0.60, R) >droYak2.chrX 19022287 101 + 21770863 UACUCGCCCACCUUGCGGCGCGCUUAUGUUUCAGAUGAUUUACACCCCAUAAGGUUGGCCAUUAUGCUAAUGAAGCGUCUGGAGCGCUGGCAUGGGACGAC ...(((((((...((((((((((....))((((((((.((((.....(((((((....)).)))))....)))).))))))))))))).))))))).))). ( -34.30, z-score = -1.55, R) >droSec1.super_4 5137520 101 + 6179234 UUCUCGCCCACCUUGCGGCAAGCUUAUGUUUCAGAUGAUUUACACCCCAUAAGGUUGGCCAUUAUGGUAAUGAAGCGUCUGGAGCGACGGAGUGGGACGAC ...((((((((((.((.....))...(((((((((((.((((....((((((((....)).))))))...)))).)))))))))))..)).))))).))). ( -36.40, z-score = -2.61, R) >droSim1.chrX 4462342 101 - 17042790 UUCUCGCCCACCUUGCGGCAAGCUUAUGUUUCAGAUGAUUUACACCCCAUAAGGUUGGCUAUUAUGGUAAUGAAGCGUCUGGAGCGACGGAGUGGGACGAC ...((((((((((.((.....))...(((((((((((.((((....((((((((....)).))))))...)))).)))))))))))..)).))))).))). ( -33.70, z-score = -1.95, R) >consensus UUCUCGCCCACCUUGCGGCAAGCUUAUGUUUCAGAUGAUUUACACCCCAUAAGGUUGGCCAUUAUGGUAAUGAAGCGUCUGGAGCGACGGAGUGGGACGAC ..........................(((((((((((.((((....((((((((....)).))))))...)))).)))))))))))............... (-17.20 = -17.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:46 2011