| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,721,765 – 5,721,868 |
| Length | 103 |
| Max. P | 0.966818 |
| Location | 5,721,765 – 5,721,868 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.76 |
| Shannon entropy | 0.37403 |
| G+C content | 0.33011 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -12.29 |
| Energy contribution | -15.98 |
| Covariance contribution | 3.69 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5721765 103 - 22422827 AGUUAGCCAUUG-AACAC----AAAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAUAAAUCAUAAAAAUUCCAAAUCCGAUUUAUUUAAUCGCCAACUGCAU ............-.....----...(((((.(((((..(((((((............................)))))))....((((.....))))))))).))))) ( -19.79, z-score = -2.88, R) >droSim1.chrX 4460273 104 - 17042790 AGUUAGCCAUGGAAACACGGAAACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU----AAUCGGAUUUAUUUAAUUGCUAAGUGCAU .(((..((.((....)).)).))).((((((((((((....(((((((((.(((....))).......(((....----.))).)))))))))...)))))))))))) ( -30.30, z-score = -4.28, R) >droSec1.super_4 5135491 100 + 6179234 AGUUAGCCAUGGAAACAC----ACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU----AAUCGGAUUUAUUUAAUUGCUAAGUGCAU .........((....)).----...((((((((((((....(((((((((.(((....))).......(((....----.))).)))))))))...)))))))))))) ( -25.80, z-score = -2.78, R) >droYak2.chrX 19020074 81 + 21770863 AGUUAGCCAUGGAAACAC----ACAGUGCACUUGGG---UGGAAUUAAUCAUUAAAAAUAAGUAAAUG----CCA----AAUGGGAUUUAUUUAGU------------ ((((.(((.((....))(----(.((....))))))---)..))))............(((((((((.----((.----...)).)))))))))..------------ ( -15.20, z-score = -0.66, R) >consensus AGUUAGCCAUGGAAACAC____ACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU____AAUCGGAUUUAUUUAAUUGCUAAGUGCAU .........((....))........((((((((((((....(((((((((..................................)))))))))...)))))))))))) (-12.29 = -15.98 + 3.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:44 2011