| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,720,714 – 5,720,805 |
| Length | 91 |
| Max. P | 0.780941 |
| Location | 5,720,714 – 5,720,805 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 86.13 |
| Shannon entropy | 0.25157 |
| G+C content | 0.50277 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -17.09 |
| Energy contribution | -18.54 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5720714 91 - 22422827 GUGCUGAUAAUCCAGUGGCCGCCCCUUUCGCCGGCCACCUUCGAGUUGGCAAAUCGUUGCAUAAACUUUUGCCUGCUCCUAAAGAAAACUA ((.((.........(((((((.(......).)))))))....((((.((((((..(((.....))).)))))).))))....))...)).. ( -27.00, z-score = -2.90, R) >droEre2.scaffold_4690 3069041 87 - 18748788 GGGCUGAUAAUCCAGUGCCGCCC--UUUUGCCGGCCACCUUCAAGUUGGCAAAUCGUUGCAUAAACUUUUGCCUGCUGC--AAGGCAACUA ((((((......)))).))((..--.(((((((((.........))))))))).....))........((((((.....--.))))))... ( -25.20, z-score = -0.22, R) >droYak2.chrX 19019118 75 + 21770863 -GGCUGAUAAUCCAG-------------CGGCGACCACCUUCAAGUUGGCAAAUCGUUGCAUAAACUUUUGCCAGCUCC--AAGGAAACUA -.((((......)))-------------)........((((..((((((((((..(((.....))).))))))))))..--))))...... ( -25.30, z-score = -3.25, R) >droSec1.super_4 5134407 90 + 6179234 GUGCUGAUAAUCCAGUGCCGCCCCUUUUCGCCGGCCACCUUCGAGUUGGCAAAUCGUUGCAUAAACUUUUGCCUGCUCC-UAAGGAAACUA (..(((......)))..).(((..........)))..((((.((((.((((((..(((.....))).)))))).)))).-.))))...... ( -26.00, z-score = -2.43, R) >droSim1.chrX 4459209 90 - 17042790 GUGCUGAUAAUCCAGUGCCACCCCUUUUCGCCGGCCACCUUCGAGUUGGCAAAUCGUUGCAUAAACUUUUGCCUGCUCC-UAAGGAAACUA (..(((......)))..)...................((((.((((.((((((..(((.....))).)))))).)))).-.))))...... ( -23.80, z-score = -2.03, R) >consensus GUGCUGAUAAUCCAGUGCCGCCCC_UUUCGCCGGCCACCUUCGAGUUGGCAAAUCGUUGCAUAAACUUUUGCCUGCUCC__AAGGAAACUA ((((((......))))))...................((((.((((.((((((..(((.....))).)))))).))))...))))...... (-17.09 = -18.54 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:44 2011