| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,716,309 – 5,716,405 |
| Length | 96 |
| Max. P | 0.511625 |
| Location | 5,716,309 – 5,716,405 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 71.15 |
| Shannon entropy | 0.63649 |
| G+C content | 0.49584 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.77 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5716309 96 - 22422827 ------------CAGCUGGUGCGAAGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG-ACUGCGCAACUUUUUCGCACCAGCCCAAGCC--- ------------..((((((((((((.....((.((((....((((..((((((((.....)))..)))))..))))-....)))).)).)))))))))))).......--- ( -36.00, z-score = -3.42, R) >droPer1.super_28 582431 106 + 1111753 ---UGCCGCAUUGCUUGGGUGCGAAGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG-ACUGCGCAACAUUUUGGC--CAGGCCAAGCCGAG ---.((((((((.....))))))......((((((((.((((((.(((.....(((.....)))......(..(...-.)..)))).)))))).))--..)))))))).... ( -31.10, z-score = 0.52, R) >dp4.chrXL_group1a 7058167 106 + 9151740 ---UGCCGCAUUGCUUGGGUGCGAAGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG-ACUGCGCAACAUUUUGGC--CAGGCCAAGCCGAA ---.((((((((.....))))))......((((((((.((((((.(((.....(((.....)))......(..(...-.)..)))).)))))).))--..)))))))).... ( -31.10, z-score = 0.54, R) >droAna3.scaffold_13117 1150973 96 - 5790199 -----------CUGCGGACACCGAAGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG-ACUGUGCAACUUUUUCGCA-CCCGCGAAACC--- -----------.(((((...((((.....)))).((((((((.(.(((((((((((.....)))..))))).((...-.))..))).).))))))))-.))))).....--- ( -24.60, z-score = -1.09, R) >droEre2.scaffold_4690 3065293 95 - 18748788 ------------CAGCGGGUGCGAGGUAAUUGGCUGCG-AAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG-ACUGCGCAGCUUUUUCGCACCACACCAGUCC--- ------------.....(((((((((.....(((((((-...((((..((((((((.....)))..)))))..))))-....))))))).)))))))))..........--- ( -34.90, z-score = -2.31, R) >droYak2.chrX 19014502 100 + 21770863 ---------CAGCGCGAAGUGCGAAGUAAUUGGCUGCGAAAACGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG-ACUGCGCAACUUUUUCGCACCAGCCCCAAGCC-- ---------....((...((((((((.....((.((((....((((..((((((((.....)))..)))))..))))-....)))).)).))))))))..))........-- ( -29.10, z-score = -0.94, R) >droSec1.super_4 5130078 96 + 6179234 ------------CAUCUGGUGCGAAGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG-AAUGCGCAACUUUUUCGCACCAGCCCAACCC--- ------------...(((((((((((.....((.((((....((((..((((((((.....)))..)))))..))))-....)))).)).)))))))))))........--- ( -32.10, z-score = -3.11, R) >droSim1.chrX 4454780 96 - 17042790 ------------CAGCUCGUGCGAAGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG-ACUGCGCAACUUUUUCGCACCAGCCCAAGCC--- ------------..(((.((((((((.....((.((((....((((..((((((((.....)))..)))))..))))-....)))).)).)))))))).))).......--- ( -29.50, z-score = -1.66, R) >droWil1.scaffold_181096 7300519 102 - 12416693 -----CGCCAUUUUCUUGGUG-GAAGUAAUUGGCU-CGAG---UUCCCCAUAAAUCAAACCGAUAAUUAUGUGGGCGAAUUGUGCAACCUUUUGCCAGUCAGCCAAGGCGCA -----((((((((((.....)-)))))..((((((-.(((---(((((((((.(((.....))).....)))))).))))((.((((....)))))).)))))))))))).. ( -30.70, z-score = -1.54, R) >droVir3.scaffold_12928 6008915 97 + 7717345 ---UCGCCUUCGCGCUGGACGCCAAGUAAUUGGCUGCAAAAAUGCUGCCAUAAAUCAGGGCGAUAAUUAUGUGGGCG-ACUGCGCG-----CCAGCACUAGGUGAA------ ---((((((..(.(((((.((((.......((((.(((....))).))))........))))........(..(...-.)..)...-----))))).).)))))).------ ( -38.86, z-score = -2.20, R) >droMoj3.scaffold_6473 15380136 84 + 16943266 ---------UUUUUUUUUUCACUUUGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAGGCGAUAAUUAUGUGGGCG-CCAGGCAG-----UAGGCGGU------------- ---------.........((.(((((....((((.((......)).)))).....))))).))............((-((......-----..))))..------------- ( -20.60, z-score = 0.20, R) >droGri2.scaffold_15203 8856232 104 - 11997470 UCUCUUUUUUGGAGCUGGGUGCCAAGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAAGCGAUAAUUAUGUGGGCG-ACUGCGCU-----CCGCCGGAAGGUAAAUGCC-- ..........(((((..((((((..(((((((((.((......)).)))....(((.....)))))))))...))).-)))..)))-----))(((....))).......-- ( -33.70, z-score = -1.26, R) >consensus ____________CACUGGGUGCGAAGUAAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCG_ACUGCGCAACUUUUUCGCACCAGGCCAAGCC___ ....................((.((....)).))((((....((((..((((((((.....)))..)))))..)))).....)))).......................... (-11.22 = -11.77 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:40 2011