| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,711,146 – 5,711,212 |
| Length | 66 |
| Max. P | 0.921422 |
| Location | 5,711,146 – 5,711,212 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 70.83 |
| Shannon entropy | 0.39370 |
| G+C content | 0.36387 |
| Mean single sequence MFE | -14.39 |
| Consensus MFE | -9.14 |
| Energy contribution | -10.70 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921422 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5711146 66 - 22422827 UGAAUACAUGUAUGUUUUUUCACAGAAGAUGACCAACGAUGAAU--------UGUUUUGUAGAAGCAUCCAUCU .......(((.((((((((..((((((.(...............--------).)))))))))))))).))).. ( -8.96, z-score = 0.33, R) >droSec1.super_4 5125477 64 + 6179234 ---------ACAUGGAUUUUUACAGAAGGUGACCAACGAUGAGUUGGCAUAAUGUUUUGUAGGAGCAUAAGCA- ---------........((((((((((.(((.(((((.....))))))))....))))))))))((....)).- ( -17.10, z-score = -3.09, R) >droSim1.chrX 4449790 68 - 17042790 -----AUAUACAUGGAUUUUUACAGAAGGUGACCAACGAUGAGUUGGCAUAAUGUUUUGUAGGAGCAUAAGCA- -----............((((((((((.(((.(((((.....))))))))....))))))))))((....)).- ( -17.10, z-score = -3.01, R) >consensus _____A_AUACAUGGAUUUUUACAGAAGGUGACCAACGAUGAGUUGGCAUAAUGUUUUGUAGGAGCAUAAGCA_ ................(((((((((((.((..(((((.....)))))....)).)))))))))))......... ( -9.14 = -10.70 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:39 2011