| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,707,057 – 5,707,145 |
| Length | 88 |
| Max. P | 0.516410 |
| Location | 5,707,057 – 5,707,145 |
|---|---|
| Length | 88 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 66.36 |
| Shannon entropy | 0.53700 |
| G+C content | 0.36000 |
| Mean single sequence MFE | -15.68 |
| Consensus MFE | -9.56 |
| Energy contribution | -8.88 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.61 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5707057 88 + 22422827 -----CUGAGGGGUGGCGAAAAGGAUUGUCACAUUUUGGGCGAAAACAUUAACAUCUAAUAUCGAUUAACAUUUAAUUAUAGCCAGUUUUUGA -----(..(((.(((((((......))))))).)))..).(((((((((((.....))))...(((((.....))))).......))))))). ( -15.40, z-score = -0.58, R) >droSim1.chrX 12562944 88 - 17042790 -----UUGAGGGCUGGCGAAAAGGAUUGCCACAUUUUAGGCGAAAACAUUAACAUCUAAUAUCGAUUAACAUUUAAUCAUCGUCCGUUUUGGG -----.(.(((((.(((((......(((((........)))))....................(((((.....))))).))))).))))).). ( -17.70, z-score = -0.88, R) >droSec1.super_4 5121440 86 - 6179234 -----CUGAGGGCUGGCGAAAAGGAUUGCCACAUUUUAGGCGAAAACAUUAACAUCUAAUAUCGAUUAACAUUUAAUCAUCGUCCGUUUUG-- -----...(((((.(((((......(((((........)))))....................(((((.....))))).))))).))))).-- ( -17.40, z-score = -1.17, R) >droAna3.scaffold_13248 53017 85 + 4840945 UAAGGCGGCAAGAGACCAAGAAACAUUUUUUUUUUUUCGAAAAAGAAAUGACCAGUUGAGGUAGAUU----UUCAAACAUGAUUGAUUA---- ...(((.......).))..((((((((((((((((...))))))))))))(((......)))....)----)))...............---- ( -12.20, z-score = -0.01, R) >consensus _____CUGAGGGCUGGCGAAAAGGAUUGCCACAUUUUAGGCGAAAACAUUAACAUCUAAUAUCGAUUAACAUUUAAUCAUCGUCCGUUUUG__ .....((((((.(((((((......))))))).))))))........................(((((.....)))))............... ( -9.56 = -8.88 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:38 2011