| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,694,989 – 5,695,079 |
| Length | 90 |
| Max. P | 0.872951 |
| Location | 5,694,989 – 5,695,079 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 70.37 |
| Shannon entropy | 0.54147 |
| G+C content | 0.54486 |
| Mean single sequence MFE | -36.52 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.76 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5694989 90 - 22422827 UUCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUG--GCAAAUUGGA--CGGGAAACGUCGCUGGGAAUGGGCUGGUAACAGCCAGCUGGCAAA-------------- ....((((((......((((((.(((((.(((((.--...))))).)--).(....).)))..))).)))(((((....))))).))))))...-------------- ( -36.50, z-score = -2.61, R) >droSim1.chrX 4434279 90 - 17042790 UUCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUG--GCAAAUUGCA--CGGGAAACGUCGCUGGGAAUGGGCUGGUAACAGCCAGCUGGCAAA-------------- ....((((((......((((((.(((((((((((.--...)))))))--).(....).)))..))).)))(((((....))))).))))))...-------------- ( -41.00, z-score = -3.88, R) >droSec1.super_4 5109808 90 + 6179234 UUCGGUCAGCAGAAUGCAUUCCUCGAGUGCAGUUG--GCAAAUUGCA--CGGGAAACGUCGCUGGGAAUGGGCUGGUAACAGCCAGCUGGCAAA-------------- ....((((((......((((((((((((((((((.--...)))))))--).(....).)))..)))))))(((((....))))).))))))...-------------- ( -42.70, z-score = -4.88, R) >droEre2.scaffold_4690 3043496 89 - 18748788 -UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUG--GCAAAUUGCA--CGGGAAACGUCGCCGGGAAUGGGUUGCUAACAGCCAGCUGGCAAA-------------- -...((((((......((((((.(((((((((((.--...)))))))--).(....).)))..))).)))(((((....))))).))))))...-------------- ( -36.60, z-score = -2.54, R) >dp4.chrXL_group1a 7020646 88 + 9151740 -UUGGUCAGCAAAAUGCAUCCCUGGAGUGCAGUUG--GCAAAUUGCA--CGGAAAACGUCGCUGGGAAUGAGCUGGCGACUGGAAGCUGGAAG--------------- -....(((((........(((.....((((((((.--...)))))))--))))....(((((..(.......)..))))).....)))))...--------------- ( -29.30, z-score = -1.40, R) >droPer1.super_28 543212 88 + 1111753 -UUGGUCAGCAAAAUGCAUCCCUGGAGUGCAGUUG--GCAAAUUGCA--CGGAAAACGUCGCUGGGAAUGAGCUGGCGACUGGAAGCUGCAAG--------------- -.......(((....((.(((.....((((((((.--...)))))))--).......(((((..(.......)..))))).))).)))))...--------------- ( -29.50, z-score = -1.12, R) >droVir3.scaffold_12928 5959490 101 + 7717345 UGCAGCCAACAAAAUGCAUCCCUUGGGUGCAGUUGUUGCCGGUUGCAUCUGUUAAACUGCGCUGCAAUCGUUUCUGGU--AGCUAGGCGACCGGAGGCGCCAC----- ((((((((((((..(((((((...))))))).)))))).(((((..........))))).))))))..((((((((((--.((...)).))))))))))....----- ( -40.40, z-score = -1.84, R) >droMoj3.scaffold_6473 15282663 106 + 16943266 --CCGCCGACAAAAUGCAUCCCUCGGGUGCAGUUGUUGCCAGUUGCAUCUGUUAAAUUGCGCUGCAAUCGCUGCGAUUCGAAGUGGGCGAAAAGAGUAGAUGCUCUAG --.((((.((.....(((.....((((((((..((....))..))))))))......)))((.((....)).))........)).))))...(((((....))))).. ( -36.20, z-score = -1.62, R) >consensus _UCGGUCAGCAAAAUGCAUCCCUCGAGUGCAGUUG__GCAAAUUGCA__CGGGAAACGUCGCUGGGAAUGGGCUGGUAACAGCCAGCUGGCAAA______________ ......((((..........((.....(((((((......)))))))...)).....((.(((((.......))))).)).....))))................... (-11.70 = -11.76 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:37 2011