| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,300,338 – 10,300,449 |
| Length | 111 |
| Max. P | 0.781907 |
| Location | 10,300,338 – 10,300,449 |
|---|---|
| Length | 111 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 74.26 |
| Shannon entropy | 0.52686 |
| G+C content | 0.45769 |
| Mean single sequence MFE | -32.27 |
| Consensus MFE | -18.74 |
| Energy contribution | -19.57 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10300338 111 + 23011544 GCGAUAGGCAUUAGCCGAUUCCUGUGGACUUAGGUCUACGUUGGAGCUAUUGACAAAGUCUGGAGCAGAGUUGGCGGUCUCCAAAUCCUUUCCCGUGAUAUUGAAAGGAGU .....((((....((((((((..((((((....))))))......(((...(((...)))...))).)))))))).)))).....(((((((..........))))))).. ( -35.10, z-score = -1.22, R) >droSim1.chrU 1051130 111 - 15797150 GCGAUAGGCGUUAGCCGAUUCCUGUGGACUUAGGUCUACGUUGGAGCUAUUAACGAAAUCUGGAGCAGAGUUGGCGGUCUCCAAAUCCUUUCCAGUGAUAUUGAAAGGAGU ..((..(((....)))...))..((((((....)))))).(((((((..(((((....((((...)))))))))..).)))))).(((((((.(......).))))))).. ( -33.80, z-score = -1.06, R) >droSec1.super_3 5725392 111 + 7220098 GCGAUAGGCGUUAGCCGAUUCCUGUGGACUUAGGUCUACGUUGGAGCUAUUAACGAAAUCUGGAGCAGAGUUGGCGGUCUCCAAAUCCUUUCCCGUGAUAUUGAAAGGAGU ..((..(((....)))...))..((((((....)))))).(((((((..(((((....((((...)))))))))..).)))))).(((((((..........))))))).. ( -33.50, z-score = -0.80, R) >droYak2.chr2L 12974617 111 + 22324452 GCGAUAGGCAUUAGCCGACUCCUGUGGACUUAGAUCUACGUUGGAGCUAUUGACAAAGUCUGGAGCGGAGUUGGCGGCCUCCAAAUCCUUUCCCGUGAUAUUGAAAGGAGU .....((((....(((((((((.(((((......)))))......(((...(((...)))...)))))))))))).)))).....(((((((..........))))))).. ( -40.20, z-score = -2.48, R) >droEre2.scaffold_4929 10906914 111 + 26641161 ACGAUAGGCAUUAGCCGAUUCCUGUGGACUAAGGUCUACGUUGGAGCUAUUAACAAAGUCUGGAGCGGAGUUGGCAGUCUCCAAAUCCUUUCCCGUGAUAUUGAAAGGAGU ......((.....(((((((((.((((((....))))))(((..((((........)).))..)))))))))))).....))...(((((((..........))))))).. ( -33.70, z-score = -1.29, R) >droAna3.scaffold_12916 14129479 111 + 16180835 CCUAAAUGCAUUGGCUGAUUCUUGAGGACUUAGGUCGAAACUUGAGCUAUUGACGAAUGGCGGCGCCGAAUUGGCGGUAUCCAGAUCCUUGACAGUGAUAUUAUGUGGAGU ((...(((...(.((((....(..((((.((((((....))))))((((((....))))))((.((((......))))..))...))))..))))).)...)))..))... ( -25.70, z-score = 0.70, R) >droMoj3.scaffold_6500 29920732 109 + 32352404 UUGUAAUUUAUUGGAGAAUGUUUGAGGAUUUACAUCAAAUGAUGUGUCAUUAUUAGCGAC--AAAAAGGUUAAAUGGAGUCUUCGUCUCCAGAAAUUUUAUAGGAAGAAGU ((((((.((.(((((((.....((((((((((((((....)))))(((.........)))--..............)))))))))))))))).))..))))))........ ( -23.90, z-score = -1.79, R) >consensus GCGAUAGGCAUUAGCCGAUUCCUGUGGACUUAGGUCUACGUUGGAGCUAUUAACAAAGUCUGGAGCAGAGUUGGCGGUCUCCAAAUCCUUUCCCGUGAUAUUGAAAGGAGU .....((((....((((((((..((((((....))))))......(((.....((.....)).))).)))))))).)))).....(((((((..........))))))).. (-18.74 = -19.57 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:54 2011