| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,644,804 – 5,644,856 |
| Length | 52 |
| Max. P | 0.997886 |
| Location | 5,644,804 – 5,644,856 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 84.04 |
| Shannon entropy | 0.28352 |
| G+C content | 0.41538 |
| Mean single sequence MFE | -13.40 |
| Consensus MFE | -12.12 |
| Energy contribution | -11.28 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.54 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.20 |
| SVM RNA-class probability | 0.997886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5644804 52 + 22422827 CUGCCAGGGUAAAUAAACUUUCGUUUGCCUUUCUCCUGGUAUUGACACUUUG .(((((((..((((((((....)))))..)))..)))))))........... ( -13.20, z-score = -2.76, R) >droEre2.scaffold_4690 2993697 52 + 18748788 CUGCAGGGGUAAACAAACUCUUGUUUGCCAUUCCACUCGUGUUGACUCUUUG .....(((((((((((....)))))))))...)).................. ( -10.70, z-score = -0.85, R) >droYak2.chrX 18942232 52 - 21770863 CUGCAAGGGUAAAUAAACUUUUGUUUGUCUUUCCUCUUGUAUUGACUCUUUG .((((((((...((((((....))))))....)).))))))........... ( -11.70, z-score = -3.70, R) >droSec1.super_4 5059950 52 - 6179234 CUGCCAGGGUAAAUAAACUUUUGUUUACCCCUUCCCUGGUAUUGACUCUUUG .((((((((....(((((....)))))......))))))))........... ( -16.00, z-score = -4.18, R) >droSim1.chrX_random 1855100 52 + 5698898 CUGCCAGGGUAAAUAAACUUACGUUUACCUCUUCCCUGGUAUUGACUCUUUG .((((((((....(((((....)))))......))))))))........... ( -15.40, z-score = -4.13, R) >consensus CUGCCAGGGUAAAUAAACUUUUGUUUGCCUUUCCCCUGGUAUUGACUCUUUG .((((((((....(((((....)))))......))))))))........... (-12.12 = -11.28 + -0.84)
| Location | 5,644,804 – 5,644,856 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 84.04 |
| Shannon entropy | 0.28352 |
| G+C content | 0.41538 |
| Mean single sequence MFE | -12.66 |
| Consensus MFE | -11.34 |
| Energy contribution | -11.78 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.71 |
| SVM RNA-class probability | 0.994567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5644804 52 - 22422827 CAAAGUGUCAAUACCAGGAGAAAGGCAAACGAAAGUUUAUUUACCCUGGCAG .............(((((..(((...((((....)))).)))..)))))... ( -13.30, z-score = -2.85, R) >droEre2.scaffold_4690 2993697 52 - 18748788 CAAAGAGUCAACACGAGUGGAAUGGCAAACAAGAGUUUGUUUACCCCUGCAG ...............((.((...(((((((....)))))))...)))).... ( -8.50, z-score = 0.09, R) >droYak2.chrX 18942232 52 + 21770863 CAAAGAGUCAAUACAAGAGGAAAGACAAACAAAAGUUUAUUUACCCUUGCAG .............((((.(((((...((((....)))).))).))))))... ( -6.10, z-score = -1.30, R) >droSec1.super_4 5059950 52 + 6179234 CAAAGAGUCAAUACCAGGGAAGGGGUAAACAAAAGUUUAUUUACCCUGGCAG .............((((((...((((((((....)))))))).))))))... ( -16.30, z-score = -3.56, R) >droSim1.chrX_random 1855100 52 - 5698898 CAAAGAGUCAAUACCAGGGAAGAGGUAAACGUAAGUUUAUUUACCCUGGCAG .............((((((...((((((((....)))))))).))))))... ( -19.10, z-score = -5.35, R) >consensus CAAAGAGUCAAUACCAGGGGAAAGGCAAACAAAAGUUUAUUUACCCUGGCAG .............((((((...((((((((....)))))))).))))))... (-11.34 = -11.78 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:27 2011