| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,639,549 – 5,639,720 |
| Length | 171 |
| Max. P | 0.984305 |
| Location | 5,639,549 – 5,639,656 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 96.17 |
| Shannon entropy | 0.06702 |
| G+C content | 0.49159 |
| Mean single sequence MFE | -33.08 |
| Consensus MFE | -29.44 |
| Energy contribution | -30.00 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5639549 107 + 22422827 ACCAUCUCGAGUUGAGGUAAAAGGUAACCGUAAAUCGAUUACACAAUGACCAAGCUCACGAUCGUGAGUGUGUGUGCGAGGGAGCACGACCUACGCAUCUCUGAUGG .(((((..(((....(((.....((((.((.....)).))))......)))..((((((....))))))....((((((((........))).)))))))).))))) ( -33.40, z-score = -1.52, R) >droSim1.chrX_random 1848414 107 + 5698898 ACCAUCUCGAGUUGGGGUAAAAGGUAACCGUAAAUCGAUUACACAAUGACCAAGCUCACGAUCGUGAGUGUGUGUGCGAGGGAGCACGACUUACGCAUCUCUGAUGG .(((((..(((((..(((.....((((.((.....)).))))......))).)))))..((((((((((...(((((......)))))))))))).)))...))))) ( -36.40, z-score = -2.24, R) >droSec1.super_4 5054777 107 - 6179234 ACCAUCUCGAGUUGGGGUAAAAGGUAACCGUAAAUCGAUUACACAAUGACCAAGCUCACGAUCGUGAGUGUGUGUGCGAGGGAGCACGACUUACGCAUCUCUGAUGG .(((((..(((((..(((.....((((.((.....)).))))......))).)))))..((((((((((...(((((......)))))))))))).)))...))))) ( -36.40, z-score = -2.24, R) >droYak2.chrX 18936525 107 - 21770863 ACCAUCUCCAGUUGGGGUAAAAGGUAACCGUAAAUCUAUUACACAAUGACAAAGCUCACGAUCGUGAGUGUGUGUGCGAGAGAGCACGACCUACGCAUCUCUGAUGG .(((((....((((..((((.((((........)))).)))).)))).(((..((((((....))))))...)))...(((((((.........)).)))))))))) ( -30.20, z-score = -1.07, R) >droEre2.scaffold_4690 2988454 107 + 18748788 ACCAUCUCCAGUUGGGGUAAAAGGUAACCGUAAAUCGAUUACACAAUGCCGAAUCUCACGAUCGUGAGUGUGUGUGCGAGAGAGCACGACCUACGCAUCUCUGAUGG .(((((.((....))((((....((((.((.....)).))))....))))((..(((((....)))))(((((((((......)))).....)))))))...))))) ( -29.00, z-score = -0.28, R) >consensus ACCAUCUCGAGUUGGGGUAAAAGGUAACCGUAAAUCGAUUACACAAUGACCAAGCUCACGAUCGUGAGUGUGUGUGCGAGGGAGCACGACCUACGCAUCUCUGAUGG .(((((((((.(((.(((........))).))).)))).((((((........((((((....)))))).))))))..(((((((.........)).)))))))))) (-29.44 = -30.00 + 0.56)
| Location | 5,639,549 – 5,639,656 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 96.17 |
| Shannon entropy | 0.06702 |
| G+C content | 0.49159 |
| Mean single sequence MFE | -34.14 |
| Consensus MFE | -31.66 |
| Energy contribution | -31.82 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5639549 107 - 22422827 CCAUCAGAGAUGCGUAGGUCGUGCUCCCUCGCACACACACUCACGAUCGUGAGCUUGGUCAUUGUGUAAUCGAUUUACGGUUACCUUUUACCUCAACUCGAGAUGGU (((((.(((....(((((((((((......))))((((((((((....))))).........)))))....)))))))(((........)))....)))..))))). ( -34.70, z-score = -2.37, R) >droSim1.chrX_random 1848414 107 - 5698898 CCAUCAGAGAUGCGUAAGUCGUGCUCCCUCGCACACACACUCACGAUCGUGAGCUUGGUCAUUGUGUAAUCGAUUUACGGUUACCUUUUACCCCAACUCGAGAUGGU (((((.(((.((.(((((((((((......))))((((((((((....))))).........)))))....)))))))(((........))).)).)))..))))). ( -34.80, z-score = -3.00, R) >droSec1.super_4 5054777 107 + 6179234 CCAUCAGAGAUGCGUAAGUCGUGCUCCCUCGCACACACACUCACGAUCGUGAGCUUGGUCAUUGUGUAAUCGAUUUACGGUUACCUUUUACCCCAACUCGAGAUGGU (((((.(((.((.(((((((((((......))))((((((((((....))))).........)))))....)))))))(((........))).)).)))..))))). ( -34.80, z-score = -3.00, R) >droYak2.chrX 18936525 107 + 21770863 CCAUCAGAGAUGCGUAGGUCGUGCUCUCUCGCACACACACUCACGAUCGUGAGCUUUGUCAUUGUGUAAUAGAUUUACGGUUACCUUUUACCCCAACUGGAGAUGGU (((((.......((((((((((((......))))((((((((((....))))).........)))))....)))))))).............((....)).))))). ( -32.00, z-score = -1.75, R) >droEre2.scaffold_4690 2988454 107 - 18748788 CCAUCAGAGAUGCGUAGGUCGUGCUCUCUCGCACACACACUCACGAUCGUGAGAUUCGGCAUUGUGUAAUCGAUUUACGGUUACCUUUUACCCCAACUGGAGAUGGU (((((.......((((((((((((......))))(((((....(((((....)).)))....)))))....)))))))).............((....)).))))). ( -34.40, z-score = -2.08, R) >consensus CCAUCAGAGAUGCGUAGGUCGUGCUCCCUCGCACACACACUCACGAUCGUGAGCUUGGUCAUUGUGUAAUCGAUUUACGGUUACCUUUUACCCCAACUCGAGAUGGU (((((.(((.((.(((((((((((......))))((((((((((....))))).........)))))....)))))))(((........))).)).)))..))))). (-31.66 = -31.82 + 0.16)
| Location | 5,639,620 – 5,639,720 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 92.67 |
| Shannon entropy | 0.10101 |
| G+C content | 0.57000 |
| Mean single sequence MFE | -18.37 |
| Consensus MFE | -15.75 |
| Energy contribution | -15.87 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5639620 100 - 22422827 CCAACCCCCUUUCUCAUUUUUCUCCUCCAUCGCCCCUUCUUCGGCAGGCCAUCUCCCUCGCUCUCCAUCAGAGAUGCGUAGGUCGUGCUCCCUCGCACAC ...............................(((((......))..)))......((((((((((.....)))).))).)))..((((......)))).. ( -21.30, z-score = -2.90, R) >droSim1.chrX_random 1848485 100 - 5698898 CCAUCCCCCUUUCUUAUUUUUCUUCUCCUCCGCCCCUUCUUCGGCCAGUCGUCUCCCUUGCUCUCCAUCAGAGAUGCGUAAGUCGUGCUCCCUCGCACAC ............(((((..............(((........)))..(.((((((...((.....))...))))))))))))..((((......)))).. ( -16.90, z-score = -2.93, R) >droSec1.super_4 5054848 100 + 6179234 CCAUCCCCCUUUCUUAUUUUUCUUCUCCUCCGCCCCUUCUUCGGCCAGUCGUCUCCCUUGCUCUCCAUCAGAGAUGCGUAAGUCGUGCUCCCUCGCACAC ............(((((..............(((........)))..(.((((((...((.....))...))))))))))))..((((......)))).. ( -16.90, z-score = -2.93, R) >consensus CCAUCCCCCUUUCUUAUUUUUCUUCUCCUCCGCCCCUUCUUCGGCCAGUCGUCUCCCUUGCUCUCCAUCAGAGAUGCGUAAGUCGUGCUCCCUCGCACAC ............(((((..............(((........)))..............((((((.....)))).)))))))..((((......)))).. (-15.75 = -15.87 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:26 2011