| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,256,919 – 10,257,020 |
| Length | 101 |
| Max. P | 0.521458 |
| Location | 10,256,919 – 10,257,020 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 94.90 |
| Shannon entropy | 0.08594 |
| G+C content | 0.44847 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -20.56 |
| Energy contribution | -21.36 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10256919 101 - 23011544 UUUUACGAGUAUACUAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAAACGAUCGA---UUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUA ................((((((...((((......((((...(((((......)))))..))))..---....))))...)))))).................. ( -25.60, z-score = -2.51, R) >droYak2.chr2L 12931287 102 - 22324452 UUUUACGAGUAUACUAGC--AGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCGGUGGUUAUAGCUGGGCUCUGCACAUCUGUUUAGAAUUUA ................((--((((.((((..(((.((((...(((((......)))))..)))).))).....))))..).))))).................. ( -24.80, z-score = -0.79, R) >droEre2.scaffold_4929 10863241 99 - 26641161 UUUUACGAGUAUACUAGC--AGACAGGCUUACAGAGAUCCACUUCCUUUCACGGGGAACCGAUCGG---UUACAGCUGGGCUCUGCACACCUGUUUAGAAUUUA ..................--(((((((....(((((.((((((.((.....(((....)))...))---....)).)))))))))....)))))))........ ( -25.30, z-score = -1.35, R) >droSec1.super_3 5682193 101 - 7220098 UUUUACGAGUAUACUAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCGA---UUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUA ................((((((...((((......((((...(((((......)))))..))))..---....))))...)))))).................. ( -25.60, z-score = -2.42, R) >droSim1.chr2L 10039775 101 - 22036055 UUUUACGAGUAUACUAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCGA---UUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUA ................((((((...((((......((((...(((((......)))))..))))..---....))))...)))))).................. ( -25.60, z-score = -2.42, R) >consensus UUUUACGAGUAUACUAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCGA___UUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUA ................((((((...((((......((((...(((((......)))))..)))).........))))...)))))).................. (-20.56 = -21.36 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:53 2011