| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,608,013 – 5,608,113 |
| Length | 100 |
| Max. P | 0.935276 |
| Location | 5,608,013 – 5,608,113 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 54.87 |
| Shannon entropy | 0.85079 |
| G+C content | 0.36267 |
| Mean single sequence MFE | -21.17 |
| Consensus MFE | -5.26 |
| Energy contribution | -6.68 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5608013 100 + 22422827 ------CAAAGCAUUCGAAUCGUCUGGUUUG-AACUGCUUUGAAUUGAUAUAAAACCGGAUAAUUAAUCUGGGAUUA-AUUAAAUGCCGUGUCAGCACACUCAUUGCC---- ------(((((((((((((((....))))))-)).)))))))(((((((......((((((.....)))))).))))-))).((((..((((....)))).))))...---- ( -27.50, z-score = -3.11, R) >droSim1.chrX 4357674 100 + 17042790 ------CAAAGCAUUCGAAUCAGCUGGUUUG-AACUGCUUUGAAUUGACAUAAAACCGGAUAAUUAAUCUGGGAUUA-AUUAAAUGCCGUGUCAGCACAUUCAUACCC---- ------(((((((((((((((....))))))-)).)))))))..((((((......(((.(((((((((...)))))-))))....))))))))).............---- ( -27.70, z-score = -3.33, R) >droSec1.super_4 5028329 100 - 6179234 ------CAAAGCAUUCGAAUUAGCUGGUUUG-AACUGCUGUGAAAUGACAUAAAACCGGAUAAUUAAUCUGGGAUUA-AUUAAAUGCCGUGUCAGCACACUCAUACCC---- ------...((((((((((((....))))))-)).))))(((...(((((......(((.(((((((((...)))))-))))....)))))))).)))..........---- ( -24.80, z-score = -2.38, R) >droYak2.chrX 18909427 85 - 21770863 ------CAAGGCAUUCGAGUCGGCUAGUUUG-AACUGCUUUGAAUUGAUAUAAAACCGGAUAAUUAAUCUGGGAUUACACUCAAUCUCGAAU-------------------- ------(((((((((((((.(.....)))))-)).))))))).(((((..(((..((((((.....))))))..)))...))))).......-------------------- ( -21.50, z-score = -2.57, R) >droAna3.scaffold_13137 865136 108 - 1373759 UUAAACUUACAGUCUCUUACUGUCUAUCAAG-AAUUUCUUUAUACUCAAACUUAAU---AUAACUACUUCAUGACUCUGCGACUUAUACUGUGAGAUGUCUCCUUCACUGCG .....((((((((.......((..(((.(((-.....))).)))..))........---...........((((.((...)).))))))))))))................. ( -10.60, z-score = 0.19, R) >droWil1.scaffold_181096 454649 101 - 12416693 ----------UUCCCCUUAUCAUCUUAGAAGCAGAAGCUUUUAUUUAAAGUACCAUUUAUUAAUUUUGGCGAGAUUG-UUUAGUUUUCGUUUAAAAGCCAUAGUCGAAAACA ----------.....(((..((...(((((((....)))))))..((((......)))).......))..)))....-....(((((((.(((.......))).))))))). ( -14.90, z-score = -0.74, R) >consensus ______CAAAGCAUUCGAAUCAGCUGGUUUG_AACUGCUUUGAAUUGAAAUAAAACCGGAUAAUUAAUCUGGGAUUA_AUUAAAUGCCGUGUCAGCACACUCAUACCC____ ......(((((((..((((((....))))))....))))))).............((((((.....))))))........................................ ( -5.26 = -6.68 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:21 2011