| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,592,102 – 5,592,271 |
| Length | 169 |
| Max. P | 0.972453 |
| Location | 5,592,102 – 5,592,271 |
|---|---|
| Length | 169 |
| Sequences | 5 |
| Columns | 170 |
| Reading direction | reverse |
| Mean pairwise identity | 71.00 |
| Shannon entropy | 0.52540 |
| G+C content | 0.47793 |
| Mean single sequence MFE | -54.02 |
| Consensus MFE | -32.52 |
| Energy contribution | -31.32 |
| Covariance contribution | -1.20 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5592102 169 - 22422827 UGAGUGCUACUAUUCCUGGCCAGUUAAGUCGGUCCGAAA-GAAGCACUUGCUCAGCACUGGCUUGAUCUCUUGCAACCGGUUCGAGCCCGGUUCGAUGUCGAAGUUGGCUUGGCCAAUACAGAGCGCUCUUCGCGUUAACAGUGAAAAUAAAGCGCAUGUGUCCUUGGCC .(((((((.((.(((..((((.........)))).))))-).)))))))((.((((.(.(((((((.((.........)).))))))).).((((....))))))))))..((((((((((..(((((.(((((.......))))).....))))).)))))...))))) ( -56.80, z-score = -1.00, R) >droSim1.chrX 4343717 169 - 17042790 UGAGUGCUACUAUUCCCGGCCAGUUUAGUCGUUCCGUAA-GAAGCACUUGCUCAGCACUGACUUGAUCUCUUGCAACAGGUUCGAGCCCGGUUCGAUGUCGAACUUGGCUUGGCCAAGACAGAGCGCUCUUCGCGUUAACAGUGAAAUUAAAGCGCAUGUGUCCUUGGCC ..((((((........((((.......))))....((((-(.....)))))..))))))((((((...........)))))).(((((.((((((....)))))).)))))((((((((((.((((((.(((((.......))))).....))))).).))).))))))) ( -59.00, z-score = -2.01, R) >droSec1.super_4 5012782 169 + 6179234 UGAGUGCUACUAUUCCCGGCCAGUUUAGUCGUUCCGUAA-AAAGCACUUGCUCAGCACUGGCUUGAUCUCUCGCAACAGGUUCGAGCCCGGUUCGAUGUCGAACUUGGCUUGGCCAAGACAGAGCGCUCUUCGCGUUAACAGUGAAAAUAAAGCGCAUGUGUCCUUGGCC .(((((....)))))..(((((((((.((((..(((...-..(((....))).......((((((((((........))).))))))))))..))))...)))).))))).((((((((((.((((((.(((((.......))))).....))))).).))).))))))) ( -58.10, z-score = -1.69, R) >droEre2.scaffold_4690 2945008 168 - 18748788 UGCGUGCUAUUAUUCCUCGCCAGCUUGGCCGUUCCGAGG-GACGCACUUGCGCAGCACUGGC-UGAUCUCUCGCAACCGGUUCGAGCCCGGUUCGAUGUCGAACUUGGCUUGGCCAAGAGAGAGAGCUCUUCGUGCUAACAGUGAAAAUAAAGCGCAUGUGUCCUUGGCC ..................((((((((((.....)))))(-((((((..((((((((((.(((-(..((((((......(((.((((((.((((((....)))))).)))))))))..)))))).))))....)))))....((....))...))))))))))))))))). ( -69.80, z-score = -2.65, R) >droAna3.scaffold_13340 1536872 153 + 23697760 UUUGUUUAGUUUCUCUUAUCAAGUUCUGAUAUUCAGAAAUCAAAUACCUAUUAAACUUUGGC-CAACAUUUUUGAUUUAAUUGAGGCAU------AUAUGCAAUAUUUUUGAAUCCAAA----------UUCCAUUUAACAAGGAAAAAUAUAUAUGCCCGACUUUGAUU ..(((((.((((((..(((((.....)))))...)))))).)))))...((((((...((..-...))..))))))....(((.(((((------(((((.......((((....))))----------((((.........))))...)))))))))))))........ ( -26.40, z-score = -1.16, R) >consensus UGAGUGCUACUAUUCCUGGCCAGUUUAGUCGUUCCGAAA_GAAGCACUUGCUCAGCACUGGCUUGAUCUCUUGCAACAGGUUCGAGCCCGGUUCGAUGUCGAACUUGGCUUGGCCAAGACAGAGCGCUCUUCGCGUUAACAGUGAAAAUAAAGCGCAUGUGUCCUUGGCC ...(((((........((((.......))))...........(((....)))...(((((..................(((.((((((.((((((....)))))).))))))))).......(((((.....)))))..))))).......))))).............. (-32.52 = -31.32 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:20 2011