| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,591,869 – 5,591,950 |
| Length | 81 |
| Max. P | 0.915448 |
| Location | 5,591,869 – 5,591,950 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 71.56 |
| Shannon entropy | 0.53004 |
| G+C content | 0.33314 |
| Mean single sequence MFE | -18.53 |
| Consensus MFE | -9.11 |
| Energy contribution | -10.28 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.915448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5591869 81 + 22422827 CAGAGAUUCAAAUUGGAAUUAAAAGCUAUUCCUUUUGGAAAAAGGCUUCACUUUGAAGAGUAAAAUUUUG-AUUUCGAACAU-- ......(((((((..(((((..(((((.((((....))))...))))).((((....))))..)))))..-)))).)))...-- ( -16.20, z-score = -1.15, R) >droEre2.scaffold_4690 2944773 81 + 18748788 CAGAAGUUCAGAUUGGAAUUAGAAGAUAUUCCUUUUGGAAAAAGGCUUCACCUGGAAGGAUCCAAUUUUG-AAUUCGAAAAU-- ..(((.(((((((((((....((((...((((....)))).....)))).((.....)).))))).))))-)))))......-- ( -20.20, z-score = -1.45, R) >droYak2.chrX 18893738 81 - 21770863 CAGAAAUUCAAAUUGGAAUUGAUAGAUAUUCCUUUUGGAAAAAGCCUUUACUUUGAAGGGUCCAGUUUUG-AUUUCGAAAAU-- ..((((((.((((((((...........((((....))))....(((((.....))))).)))))))).)-)))))......-- ( -21.90, z-score = -2.64, R) >droSec1.super_4 5012551 75 - 6179234 -CGGGAUUCAAAUUGGAAUUAAAAGCUAUUCCUUUUG-AAAAAGCCUCCA----AAAGAGUCCAAUUUUG-AUUUCGAAAAC-- -((..(((.((((((((.(((((((......))))))-)......(((..----...))))))))))).)-))..)).....-- ( -19.00, z-score = -2.58, R) >droSim1.chrX 4343484 81 + 17042790 CAGAGAUUCAAAUUGGAAUUAAAAGCUAUUCCUUUUGGAAAAAGCCUUCACUUUGAAGAGUCCAAUUAUG-GUUUCGAAAAC-- ..((((((..(((((((.......(((.((((....))))..)))((((.....))))..)))))))..)-)))))......-- ( -20.20, z-score = -2.41, R) >droMoj3.scaffold_6473 13747857 76 + 16943266 CAAAGAAUAAAACUGGG-CUGAAAACCAUUGUUUUGGAGGAAUGGC-------GAAAUAUCCCAGUGGAAUAUGUCAGAAACUU ....((.....((((((-.......(((((.((....)).))))).-------.......))))))........))........ ( -13.68, z-score = -0.37, R) >consensus CAGAGAUUCAAAUUGGAAUUAAAAGCUAUUCCUUUUGGAAAAAGCCUUCACUUUGAAGAGUCCAAUUUUG_AUUUCGAAAAC__ ..(((((.(((((((((...........((((....)))).....((((.....))))..))))))).)).)))))........ ( -9.11 = -10.28 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:19 2011