| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,578,784 – 5,578,898 |
| Length | 114 |
| Max. P | 0.608246 |
| Location | 5,578,784 – 5,578,898 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.54 |
| Shannon entropy | 0.37224 |
| G+C content | 0.42841 |
| Mean single sequence MFE | -27.97 |
| Consensus MFE | -12.13 |
| Energy contribution | -15.73 |
| Covariance contribution | 3.60 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5578784 114 + 22422827 CUUAAGCCGCUAUUGAAAUGGCCACUUUUUGCCGAUAUUAACAUAUGUACAUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGACCACUUUCGUCAC .....((((((..(((.((((((((..((((((((((...((....))....)).))))))))..).....))))))).)))..))))))(((((...........)))))... ( -30.40, z-score = -2.68, R) >droEre2.scaffold_4690 2931625 95 + 18748788 ----------------UUUUGCCGAUAU-CAACAUUAUUAACAUAU-UAGCCCGCACGGCUAAAUGC-AUUUGGUUAUAUCACAAGUGGCACGAAUAUUGGCCACUUUCGUCAC ----------------.......(((((-.(((........(((.(-(((((.....))))))))).-.....))))))))..(((((((.(((...))))))))))....... ( -22.24, z-score = -1.95, R) >droYak2.chrX 18880391 103 - 21770863 CUUAGAUCGGUAUUGAAAUGGACACUUUAUGCCGAUAUUAACAUA----GCUUGCCCGGCGAAAUGCCAUUUGGUUAUAUCACA-------CGAAUAUUGGCCACUUUCGUCAC .....((((((((.(((........))))))))))).........----........(((((((.((((.((.((........)-------).))...))))...))))))).. ( -22.60, z-score = -0.81, R) >droSec1.super_4 4999530 114 - 6179234 CUUAAGCCGCUAUUGAAAUGGCCACUUUUUGCCGACAUUAACAUAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCAC .....((((((..(((.((((((((..((((((((((...((....))....)).))))))))..).....))))))).)))..))))))(((((...........)))))... ( -32.30, z-score = -3.11, R) >droSim1.chrX 4330431 114 + 17042790 CCUAAGCCGCUAUUGAAAUGGCCACUUUUUGCCGACAUUAACAUAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCAC .....((((((..(((.((((((((..((((((((((...((....))....)).))))))))..).....))))))).)))..))))))(((((...........)))))... ( -32.30, z-score = -3.07, R) >consensus CUUAAGCCGCUAUUGAAAUGGCCACUUUUUGCCGAUAUUAACAUAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCAC ..............(((((((.((...((((((((....................)))))))).(((((((((.........))))))))).......)).))).))))..... (-12.13 = -15.73 + 3.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:18 2011