| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,574,254 – 5,574,363 |
| Length | 109 |
| Max. P | 0.882050 |
| Location | 5,574,254 – 5,574,363 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.58 |
| Shannon entropy | 0.39170 |
| G+C content | 0.36222 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -12.19 |
| Energy contribution | -12.82 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5574254 109 - 22422827 AGCUGUCGCUUGGCGCAAAAUUGAUUGCGCAUAGAU--GAGCUG---AAAAAAAGUCAUC-AUCAUAAAAAUGUGGCAUUAAAAACUAACUAACUAACCGCAAGUGAAUAGAAGU-- ..((((((((((((((((......))))))...(((--((.((.---......)))))))-.(((((....)))))........................)))))).))))....-- ( -25.60, z-score = -1.70, R) >droSim1.chrX 4326054 113 - 17042790 AGCUGUCGCAUGGCGCAAAAUUGAUUGCGCAUAGAU--GACCUG-CAAAAAAAUGUCAUC-AUCAUAAAAAUGUGGCAUUAAAAACUAACUAAAUUUAUGAAAGUAAAUAACAGCAA .((((((((((.((((((......))))))...(((--(((.(.-.......).))))))-.........)))))))................((((((....))))))...))).. ( -30.90, z-score = -3.80, R) >droSec1.super_4 4995180 113 + 6179234 AGCUGUCGCAUGGCGCAAAAUUGAUUGCGCAUAGAU--GACCUG-CAAAAAAAUGUCAUC-AUCAUAAAAAUGUGGCAUUAAAAACUAACUAAAUUUAUGAAAGUAAAUGACAGCAA .((((((((...((((((......))))))...(((--(((.(.-.......).))))))-..((((....))))))................((((((....)))))))))))).. ( -32.80, z-score = -4.10, R) >droEre2.scaffold_4690 2927086 110 - 18748788 AGCUGUCACAUGGCG-AAAAUUGAUUGCGCAUAGAUCCUAAUGGCCUGCAAAAAACCAUCAAGCUUCGAAAUG-GACAGCCACUAAGCGUUAA-UGAAUGCAAAU-AACAGCAA--- .((((((.(((..((-((..((((((((((.(((...)))...))..))).......)))))..))))..)))-))))))......(((((..-..)))))....-........--- ( -26.91, z-score = -1.16, R) >consensus AGCUGUCGCAUGGCGCAAAAUUGAUUGCGCAUAGAU__GACCUG_CAAAAAAAAGUCAUC_AUCAUAAAAAUGUGGCAUUAAAAACUAACUAAAUUAAUGAAAGUAAAUAACAGC__ ...((((((((.((((((......))))))...(((..................))).............))))))))....................................... (-12.19 = -12.82 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:17 2011