| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,570,363 – 5,570,476 |
| Length | 113 |
| Max. P | 0.962480 |
| Location | 5,570,363 – 5,570,476 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 80.66 |
| Shannon entropy | 0.32510 |
| G+C content | 0.43567 |
| Mean single sequence MFE | -26.69 |
| Consensus MFE | -15.24 |
| Energy contribution | -16.24 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5570363 113 - 22422827 AACAGGAA--CUUAAGAUGCCACCAACAACAGUUUCCACAGCAAUUAAACCCAAAUUUU-UAAUUGCGCAUAACAGGCGUCUCUCAUGUUCCUGUCCGCAUUUGACAUUGAUCUCC .(((((((--(...(((((((...(((....)))......(((((((((........))-)))))))........))))))).....))))))))..................... ( -30.00, z-score = -4.56, R) >droSim1.chrX 4319727 96 - 17042790 AACAGGAACCCUUAAGAUGCCACCAACAGC--UUCCC-----------------AAUUU-UAAUUGCGCAUAACAGGCGUCUUUCAUGUUCCUGUCCGCGUUUGACAUUGAUCUCC .((((((((....((((((((.......((--.....-----------------.....-.....))........))))))))....))))))))..................... ( -23.82, z-score = -2.93, R) >droSec1.super_4 4991485 94 + 6179234 AACAGGAA--CUUAAGAUGCCACCAACAG---UUUCC----------------AAUUUU-UAAUUGCGCAUAACAGGCGUCUUUCAUGUUCCUGUCCGCGUUUGACAUUGAUCUCC .(((((((--(..((((((((.....(((---((...----------------......-.))))).(.....).))))))))....))))))))..................... ( -22.70, z-score = -2.39, R) >droYak2.chrX 18871891 114 + 21770863 AACAGGAA--CUUAAGAUGCCACCGACUUUAGUUGCCACAGCAAUUAACCACCGAAUUUGUAAUUGCACAUAACAGGCGCCUUUCAUGUUCCUGUCUGCGUGUGACAUUGAUCUCC .(((((((--(..(((.((((..((((....)))).....(((((((.............)))))))........)))).)))....))))))))..................... ( -26.92, z-score = -1.44, R) >droEre2.scaffold_4690 2923240 109 - 18748788 AACAGGAA--CUUUAGAUGCCACCAACAG---UUUCCACAGCAAUUAAA-CCGAAUGUU-UAAUUGCACAUAACAGGCGUGCUUCAUGUUCCUGUCUGCGUGUGACAUUGAUCUCC .(((((((--(...(((((((.......(---(....)).(((((((((-(.....)))-)))))))........))))).))....))))))))..................... ( -30.00, z-score = -2.43, R) >consensus AACAGGAA__CUUAAGAUGCCACCAACAG___UUUCCACAGCAAUUAA___C_AAUUUU_UAAUUGCGCAUAACAGGCGUCUUUCAUGUUCCUGUCCGCGUUUGACAUUGAUCUCC .(((((((.....((((((((......................................................)))))))).....)))))))..................... (-15.24 = -16.24 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:15 2011