| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,252,671 – 10,252,730 |
| Length | 59 |
| Max. P | 0.942288 |
| Location | 10,252,671 – 10,252,730 |
|---|---|
| Length | 59 |
| Sequences | 10 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 70.02 |
| Shannon entropy | 0.58770 |
| G+C content | 0.34012 |
| Mean single sequence MFE | -8.36 |
| Consensus MFE | -6.50 |
| Energy contribution | -5.69 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10252671 59 + 23011544 ---UAUUCAAGAAGAAGUCCACCAU---CUACGAGGAUGUGUUCAGCACAGACAUAUCGAGUAAA ---(((((.(((.(........).)---)).....((((((((.......))))))))))))).. ( -10.70, z-score = -1.29, R) >droGri2.scaffold_15126 7706169 62 + 8399593 UGUUUCAUAAAAAAAAAUCAGUUUA---CUUUAACGAUGUAUUCACCACGGAUGUAUCAAGCAAA (((((...............(((..---....)))(((((((((.....)))))))))))))).. ( -8.10, z-score = -1.05, R) >droMoj3.scaffold_6500 1819106 62 - 32352404 CGUUUCUUAAAAAAAAAUCGGUUUA---CUACAGCGACGUAUUCACGAAAGAUGUGUCAAGCAAA ....................((((.---.((((.(..(((....)))...).))))..))))... ( -5.50, z-score = 1.34, R) >droVir3.scaffold_12723 5597085 62 - 5802038 CCUUUCUUAAAAAAAAACCCGUUUA---UUACAACGAUGUAUUUACUAAUGAUGUAUCAAGCAAA ....................((((.---.((((.((..((....))...)).))))..))))... ( -5.00, z-score = -0.73, R) >droWil1.scaffold_181141 5290356 65 - 5303230 UGUUUUUGAAACGAAAAUCAACCAUAACUCAAGGAGAUAUAUUUAACUCUGAUAUAUCAAGUAAU ..(((((((...................)))))))((((((((.......))))))))....... ( -8.01, z-score = -0.73, R) >droAna3.scaffold_12916 14084749 59 + 16180835 ---UAUUCAAAAAGAAAUCCACCAU---AUACGAGGAUGUGUUCAGUACAGAUAUUUCCAGUAAA ---......................---.(((..(((.(((((.......))))).))).))).. ( -6.50, z-score = -0.62, R) >droEre2.scaffold_4929 10858903 59 + 26641161 ---UUUUUAAGAAGAAAUCCACCAU---CUACGAAGAUGUGUUCAGCACAGAUAUAUCGAGUAAA ---......................---.(((...((((((((.......))))))))..))).. ( -7.70, z-score = -0.97, R) >droYak2.chr2L 12926918 59 + 22324452 ---UUUUCAAAAAGAAAUCCACCAU---CUAUGAAGAUGUGUUCAGCACAGAUAUAUCGAGUAAA ---.((((.....))))........---.(((...((((((((.......))))))))..))).. ( -6.60, z-score = -0.47, R) >droSec1.super_3 5677808 59 + 7220098 ---UAUUCAAGAAGAAGUCGACCAU---CUACGAGGAUGUGUUCAGCACAGACAUAUCGAGUAAA ---(((((.........(((.....---...))).((((((((.......))))))))))))).. ( -11.70, z-score = -1.30, R) >droSim1.chr2L 10035390 59 + 22036055 ---UAUUCAAGAAGAAGUCCACCAU---CUACGAGGAUGUGUUCAGCACGGACAUAUCGAGUAAA ---(((((.(((.(........).)---)).....(((((((((.....)))))))))))))).. ( -13.80, z-score = -2.00, R) >consensus ___UUUUCAAAAAGAAAUCCACCAU___CUACGAGGAUGUGUUCAGCACAGAUAUAUCGAGUAAA ...................................((((((((.......))))))))....... ( -6.50 = -5.69 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:52 2011