| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,563,835 – 5,563,955 |
| Length | 120 |
| Max. P | 0.831416 |
| Location | 5,563,835 – 5,563,955 |
|---|---|
| Length | 120 |
| Sequences | 15 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.83 |
| Shannon entropy | 0.32318 |
| G+C content | 0.44556 |
| Mean single sequence MFE | -35.00 |
| Consensus MFE | -22.27 |
| Energy contribution | -22.11 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5563835 120 + 22422827 UAAUGGAACGCAAAAUACGUCCAUGGAUAAAUAAGAAAAUCAUCGAGUAUAUCGGUGAGCCGGAGCCGACGCUAGUGGACUUUAUAUGUUCCAAAGUGUUGGCCGGCAGCCCGCCUCAAA ..(((((.((.......)))))))((.............(((((((.....)))))))((((..(((((((((..(((((.......).)))).)))))))))))))...))........ ( -40.50, z-score = -3.28, R) >droSim1.chrX 4313164 120 + 17042790 UAAUGGAACGCAAAAUACGUCCAUGGAUCAAUAAGAAAAUCAUCGAGUAUAUCGGUGAGCCGGAGCCGACGCUAGUGGACUUUAUAUGUUCCAAAGUGUUGGCCGGCAGCCCGCCUCAAA ..(((((.((.......)))))))((.............(((((((.....)))))))((((..(((((((((..(((((.......).)))).)))))))))))))...))........ ( -40.50, z-score = -3.07, R) >droSec1.super_4 4984944 120 - 6179234 UAAUGGAACGCAAAAUACGUCCAUGGAUCAAUAAGAAAAUCAUCGAGUAUAUCGGUGAGCCGGAGCCGACGCUAGUGGACUUUAUAUGUUCCAAAGUGUUGGCCGGCAGCCCGCCUCAAA ..(((((.((.......)))))))((.............(((((((.....)))))))((((..(((((((((..(((((.......).)))).)))))))))))))...))........ ( -40.50, z-score = -3.07, R) >droEre2.scaffold_4690 2916740 120 + 18748788 UAAUGGAACGCAAAAUACGUCCAUGGAUCAAUAAGAAAAUCAUCGAGUAUAUCGGUGAGCCGGAGCCGACGCUAGUGGACUUUAUAUGUUCCAAAGUGUUGGCCGGCAGUCCGCCUCAAA ..(((((.((.......)))))))((((...........(((((((.....)))))))((((..(((((((((..(((((.......).)))).))))))))))))).))))........ ( -42.80, z-score = -3.92, R) >droAna3.scaffold_13117 3240019 120 + 5790199 UAAUGGAACGCAAAAUACGUCCAUGGAUCAAUAAGAAAAUCAUCGAAUAUAUCGGUGAACCGGAGCCGACGCUUGUGGACUUUAUAUGUUCCAAAGUGUUGGCCGGCAGUCCGCCCCAAA ..(((((.((.......)))))))((((...........(((((((.....))))))).(((..((((((((((.(((((.......).)))))))))))))))))..))))........ ( -38.70, z-score = -2.80, R) >droYak2.chrX 18865253 120 - 21770863 UAAUGGAACGCAAAAUACGUCCAUGGAUCAAUAAGAAAAUCAUCGAGUAUAUCGGUGAGCCGGAGCCGACGCUGGUGGACUUUAUAUGUUCCAAAGUGUUGGCCGGCAGCCCGCCUCAAA ..(((((.((.......)))))))((.............(((((((.....)))))))((((..(((((((((..(((((.......).)))).)))))))))))))...))........ ( -41.70, z-score = -2.92, R) >dp4.chrXL_group1e 569763 120 + 12523060 UAAUGGAACGAAAAAUACGUCCAUGGAUAAAUAAGAAAAUCAUUGAGUAUAUUGGUGAGCCGGAGCCGACUUUAGUGGACUUUAUAUGUUCCAAAGUUUUGGCCGGCAGCCAGCCCCAGA ..(((((.((.......)))))))((.............((((..(.....)..))))(((((....((((((.(.((((.......)))))))))))....)))))........))... ( -30.80, z-score = -1.40, R) >droPer1.super_30 315394 120 - 958394 UAAUGGAACGAAAAAUACGUCCAUGGAUAAAUAAGAAAAUCAUUGAGUAUAUUGGUGAGCCGGAGCCGACUUUAGUGGACUUUAUAUGUUCCAAAGUUUUGGCCGGCAGCCAGCCCCAGA ..(((((.((.......)))))))((.............((((..(.....)..))))(((((....((((((.(.((((.......)))))))))))....)))))........))... ( -30.80, z-score = -1.40, R) >droWil1.scaffold_180702 808534 120 + 4511350 UAAUGGAACGGAAAAUACGUCCAUGGAUAAAUAAAAAAAUCAUUGAAUAUAUCGGUGAGCCAGAGCCAACGUUAGUGGAUUUUAUAUGCUCCAAGGUAUUGGCCGGUAGUCCGCCCCAAA ...(((..((((...((((((....)))...........(((((((.....)))))))(((((.(((.((....))(((..........)))..))).)))))..))).))))..))).. ( -30.90, z-score = -1.35, R) >droVir3.scaffold_12928 326701 120 + 7717345 UAAUGGAACGCAAAAUACGUCCAUGGAUCAAUAAGAAAAUCAUCGAAUAUAUCGGUGAGCCGGAGCCAACGUUAGUGGACUUUAUAUGUUCCAAAGUAUUGGCCGGCAGUCCGCCCCAAA ..(((((.((.......)))))))((((...........(((((((.....)))))))((((..(((((..((..(((((.......).)))).))..))))))))).))))........ ( -34.60, z-score = -2.24, R) >droMoj3.scaffold_6328 3938787 120 - 4453435 UAAUGGAACGCAAAAUACGUCCAUGGAUCAAUAAGAAAAUCAUCGAAUAUAUCGGUGAGCCGGAGCCAACGUUAGUGGACUUUAUAUGUUCCAAAGUAUUGGCCGGCAGUCCGCCCCAAA ..(((((.((.......)))))))((((...........(((((((.....)))))))((((..(((((..((..(((((.......).)))).))..))))))))).))))........ ( -34.60, z-score = -2.24, R) >droGri2.scaffold_15203 6766771 120 + 11997470 UAAUGGAACGCAAAAUCCGUCCGUGGAUCAACAAGAAGAUCAUUGAAUAUAUUGGUGAGCCGGAGCCGACGUUAGUCGACUUCAUAUGCUCCAAAGUAUUGGCCGGCAGUCCGCCUCAAA ..(((((........)))))..((((((...........((((..(.....)..))))(((((((.((((....)))).))(((.(((((....))))))))))))).))))))...... ( -33.10, z-score = -1.04, R) >anoGam1.chr2R 59314480 120 + 62725911 CGAUCGAGAAGAAGAUUCGACCAUGGAUAAAUAAAAAGAUAAUUGAGUAUAUAGGUGAACCGGAACCAACGCUGGUGGAUUUCAUCUGCUCCAAGGUGUUAGCCGGUAGCACUCCCCAGG (((((........)).))).((.(((.........((.....))((((.....(((........)))...((((.(((....(((((......)))))....))).)))))))).))))) ( -26.20, z-score = 0.43, R) >apiMel3.Group2 10696335 120 + 14465785 UAAUGGAAAAAAGGAUAAGGCCGUGGAUUAACAAAAAAAUUAUUGAAUAUAUUGGAGAACCUGAACCUACAUUAGUAGAUUUUAUUUGUAGUAAAGUAAUGGCUGGCAGUUCUCCUCAGG ((((((......((......))((......)).......))))))........(((((((.((...((((....))))(((((((.....))))))).........)))))))))..... ( -18.70, z-score = 0.90, R) >triCas2.ChLG3 30411635 120 - 32080666 UGAUGGAACGAAAGAUUCGUCCGUGGAUUAACAAGAAAAUUAUAGAGUACAUUGGGGAGCCUGAGCCCACUUUGGUUGAUUUUAUCUGUUCCAAAGUGUUGGCAGGCUCCCAGCCUCAAG .((((((.(....).)))))).((......))............(((.......(((((((((....((((((((..(((...)))....))))))))....)))))))))...)))... ( -40.60, z-score = -3.04, R) >consensus UAAUGGAACGCAAAAUACGUCCAUGGAUCAAUAAGAAAAUCAUCGAGUAUAUCGGUGAGCCGGAGCCGACGUUAGUGGACUUUAUAUGUUCCAAAGUGUUGGCCGGCAGCCCGCCUCAAA ..(((((.((.......)))))))((.............(((((((.....)))))))(((((..((((..((..(((((.......).)))).))..)))))))))......))..... (-22.27 = -22.11 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:13 2011