| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,560,963 – 5,561,082 |
| Length | 119 |
| Max. P | 0.950372 |
| Location | 5,560,963 – 5,561,082 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 66.18 |
| Shannon entropy | 0.51915 |
| G+C content | 0.38838 |
| Mean single sequence MFE | -26.05 |
| Consensus MFE | -12.85 |
| Energy contribution | -14.35 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5560963 119 + 22422827 CUCACUCGUUGUUUGAUGCGUUUCCUAGAAUAGCUUAGCUUAUUUAUAAAAAGAUU-----GAAAUACUUCUAGGAAUGCUCCCUACUGCGACAGCUCUUCAAAUUCUAUAUGCGCGAUCGAAU ..........((((((((((((((((((((((..(((((((.........))).))-----))..)).)))))))))(((........))).....................)))).))))))) ( -23.40, z-score = -0.57, R) >droEre2.scaffold_4690 2913795 114 + 18748788 CCCACGAGGUGUAGGAUGCGUUUCCCAGAAUAGCUUAGUUUAUUUAUAAAAAGGUUGUUAUGGGAGCCAUUAUGAUCUGUAAAUUGCUUGAAUUGCUAUAUGAGCGAUCGAAUA---------- ...((.((((....((((.(((.((((.((((((((..((((....)))).)))))))).)))))))))))...)))))).......((((.(((((.....)))))))))...---------- ( -25.50, z-score = -0.55, R) >droSec1.super_4 4982134 99 - 6179234 CCCACUCGGUGUUAGAUGCGUUUCCUAGAAUAGCUUAGCUUAUUUAUAAAAAGAUU-----GAAAUUCUUCUAGGAAUGCUCCCUACGCCGAAAGCGAU-CAAAU------------------- .....(((((((..(..(((((.(((((((....(((((((.........))).))-----)).....))))))))))))..)..))))))).......-.....------------------- ( -25.40, z-score = -2.69, R) >droSim1.chrX 4310360 94 + 17042790 -CCACUCGGUGUUA-AUGCGUU-CCUAGAAUAGCUUAGCUUAUUUA-AAAAAGAU------GGAAUUCUUCUAGGAAUGCUCCCUACGCCGAAAGCGAU-CAAAU------------------- -....(((((((..-..(((((-(((((((...((...(((.....-...)))..------)).....)))))))))))).....))))))).......-.....------------------- ( -29.90, z-score = -4.17, R) >consensus CCCACUCGGUGUUAGAUGCGUUUCCUAGAAUAGCUUAGCUUAUUUAUAAAAAGAUU_____GAAAUUCUUCUAGGAAUGCUCCCUACGCCGAAAGCGAU_CAAAU___________________ .....(((((((.....(((((.(((((((...........((((......)))).............)))))))))))).....)))))))................................ (-12.85 = -14.35 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:12 2011