| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,553,205 – 5,553,283 |
| Length | 78 |
| Max. P | 0.546178 |
| Location | 5,553,205 – 5,553,283 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 78.93 |
| Shannon entropy | 0.37386 |
| G+C content | 0.58648 |
| Mean single sequence MFE | -31.48 |
| Consensus MFE | -19.24 |
| Energy contribution | -22.68 |
| Covariance contribution | 3.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5553205 78 - 22422827 CGUGCAAGGACCACACGGCGUAUGCGGCAUUUUAAGUGCGUAUAC-GCCCGGUAUGCCGAC-GGCCGUGUGUGCACGUAC ((((((.....(((((((((((((((.(((.....))))))))))-...(((....)))..-.))))))))))))))... ( -37.40, z-score = -2.44, R) >droPer1.super_15 531232 76 - 2181545 ---GCCGGUGUCACACGACGUAUGCGGCAUUUGAAGUGCGUAUACAGGUCCGUCUGCCUGCCUUCUGC-UUUCUACCUUC ---...((((((....)))(((((((.(((.....))))))))))((((......)))))))......-........... ( -18.50, z-score = 0.22, R) >droYak2.chrX 18854945 79 + 21770863 CGUGCAAGGACCACACGGCGUAUGCGGCAUUUUAAGUGCGUAUAC-GCCCGGUAUGCCGACAGGCCGUGUGUGCACAUGG .(((((.....(((((((((((((((.(((.....))))))))))-...(((....)))....))))))))))))).... ( -36.40, z-score = -2.35, R) >droSec1.super_4 4974588 78 + 6179234 CGUGCAAGGAGCACACGGCGUAUGCGGCAUUUCGAGUGCGUAUAC-GCCCGGUAUGCCGGC-GGCCAUGUGUGCACGUAC (((((.....(((((.((((((((((.(((.....))))))))))-(((.((....)))))-.))).))))))))))... ( -35.60, z-score = -1.33, R) >droSim1.chrX 4302229 74 - 17042790 ----CAAGGAGCACACGGCGUAUGCUUCAUUUUAAGUGCGUAUAC-GCCCGGUAUGCCGGU-GGCCAUGUGUGCACGUAC ----......(((((((((((((((..(((.....))).))))))-)))(((....)))..-......))))))...... ( -29.50, z-score = -1.72, R) >consensus CGUGCAAGGACCACACGGCGUAUGCGGCAUUUUAAGUGCGUAUAC_GCCCGGUAUGCCGGC_GGCCGUGUGUGCACGUAC .(((((.....(((((((((((((((.(((.....))))))))))...((((....))))...))))))))))))).... (-19.24 = -22.68 + 3.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:11 2011