| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,535,246 – 5,535,342 |
| Length | 96 |
| Max. P | 0.513443 |
| Location | 5,535,246 – 5,535,342 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 93.75 |
| Shannon entropy | 0.08609 |
| G+C content | 0.41667 |
| Mean single sequence MFE | -11.67 |
| Consensus MFE | -11.67 |
| Energy contribution | -11.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.66 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5535246 96 - 22422827 AACUCCUUUACUUAGGCCAACUAACCACAAGUACAUAUGCUGUACAACUCGAACACUAAAGACCAUACGCUAACAACCGAAAAUCUCAUUAGGAGC ..(((((....((((.....))))......(((((.....))))).............................................))))). ( -11.60, z-score = -0.69, R) >droSec1.super_4 4957089 96 + 6179234 GACUCCUUUACUUAGGCCUACUAAUCCCAAGUACAUAUGCUGUACACCUCGAACACUAAAUACCCUACGCUAAUAACCCAAAAUCUCAUUAGGAGC ..(((((....((((.....))))......(((((.....))))).............................................))))). ( -11.70, z-score = -0.86, R) >droSim1.chrX 4284726 96 - 17042790 GACUCCUUUACUUAGGCCUACUAAUCCCAAGUACAUAUGCUGUACACCUCGAACACUAAAGACCCUACGCUAAUAACCCAAAAUCUCAUUAGGAGC ..(((((....((((.....))))......(((((.....))))).............................................))))). ( -11.70, z-score = -0.43, R) >consensus GACUCCUUUACUUAGGCCUACUAAUCCCAAGUACAUAUGCUGUACACCUCGAACACUAAAGACCCUACGCUAAUAACCCAAAAUCUCAUUAGGAGC ..(((((....((((.....))))......(((((.....))))).............................................))))). (-11.67 = -11.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:10 2011