| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,512,653 – 5,512,710 |
| Length | 57 |
| Max. P | 0.772739 |
| Location | 5,512,653 – 5,512,710 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 83.50 |
| Shannon entropy | 0.26786 |
| G+C content | 0.71340 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -25.30 |
| Energy contribution | -25.14 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772739 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 5512653 57 - 22422827 AUGCCCCGGAACACGGAGGCGGGCGCCGGAAAUGCGAAUACCGGUGGAUCCGGCGGA--------- .(((((((.....))).))))..(((((((..(((........)))..)))))))..--------- ( -26.10, z-score = -1.43, R) >droSim1.chrX 4272011 57 - 17042790 AUGCCCCGGAACACGGAGGCGGGCGCCGGAAAUGCGAGUAUCGGCGGAUCCGGCGGU--------- .(((((((.....))).))))..(((((((..(((........)))..)))))))..--------- ( -28.70, z-score = -1.90, R) >droSec1.super_4 4934782 57 + 6179234 AUGCCCCGGAACACGGAGGCGGCCGCCGGAAAUGCGAGUACCGGCGGAUCCGGCGGU--------- .(((((((.....))).))))(((((((((..(((........)))..)))))))))--------- ( -32.90, z-score = -2.90, R) >droYak2.chrX 18813948 66 + 21770863 AUGCCCCGGAACACGGAGGCGGGCGCCGGCAGUGCGGUUACCGGCGGGUCUGGCGUAUCCGGCGGA .(((((((.....))).))))..((((((..(((((.(.(((....)))..).))))))))))).. ( -30.70, z-score = 0.20, R) >droEre2.scaffold_4690 2864015 57 - 18748788 AUGCCCCGGAACACGGAGGCGGGCGCCGGAAGUGCGGUUACCGGCGGAGUUGGCGGA--------- .(((((((.....))).))))..((((((...(((.(....).)))...))))))..--------- ( -22.50, z-score = 0.20, R) >consensus AUGCCCCGGAACACGGAGGCGGGCGCCGGAAAUGCGAGUACCGGCGGAUCCGGCGGA_________ .(((((((.....))).))))..(((((((..(((........)))..)))))))........... (-25.30 = -25.14 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:07 2011