| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,496,562 – 5,496,670 |
| Length | 108 |
| Max. P | 0.974628 |
| Location | 5,496,562 – 5,496,670 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 92.11 |
| Shannon entropy | 0.13959 |
| G+C content | 0.51628 |
| Mean single sequence MFE | -26.24 |
| Consensus MFE | -21.07 |
| Energy contribution | -21.87 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5496562 108 + 22422827 CAUUACAAAUAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAACCCC-CAGAAAAACGCCCGGAAAAACGGCCCAC----- ..............(((..((...((((((..((((....)))).(((((((........)))))))...))))))....-..))....)))(((......))).....----- ( -25.10, z-score = -2.38, R) >droSim1.chrX 4258261 112 + 17042790 CAUUACAAAUAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAACCCCCACGAAAAACGCCCGGAAAAACGGCCCACCCA-- ..............((((((....((((((..((((....)))).(((((((........)))))))...)))))).....))).....)))(((......)))........-- ( -26.20, z-score = -2.77, R) >droSec1.super_4 4917600 106 - 6179234 CAUUACAAAUAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACG-----AGCCAACCCC-ACGAAAAACGACCGGAAAAACCGCCCACCCA-- .............((.(((.....(((((((.((((....))))....((((........)))))-----))))))((..-.((.....))...))......))).))....-- ( -23.10, z-score = -2.93, R) >droYak2.chrX 18798657 113 - 21770863 CAUUACAAAUAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAACCCC-CAGAAAAACGCCCGGAAAAACGGGCCACCCACC ........................((((((..((((....)))).(((((((........)))))))...))))))....-.........(((((......)))))........ ( -30.70, z-score = -3.66, R) >droEre2.scaffold_4690 2848054 113 + 18748788 CAUUACAAAUAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAACCCC-CGAGAAAACGCCCGGAAAAACGGACUACCCACC ..................(((...((((((..((((....)))).(((((((........)))))))...))))))...(-((.(......).))).......)))........ ( -26.10, z-score = -2.59, R) >consensus CAUUACAAAUAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAACCCC_CAGAAAAACGCCCGGAAAAACGGCCCACCCA__ ................((((....((((((..((((....)))).(((((((........)))))))...))))))............))))(((......))).......... (-21.07 = -21.87 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:06 2011