| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,493,331 – 5,493,393 |
| Length | 62 |
| Max. P | 0.730988 |
| Location | 5,493,331 – 5,493,393 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 79.25 |
| Shannon entropy | 0.33287 |
| G+C content | 0.49785 |
| Mean single sequence MFE | -17.84 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.26 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5493331 62 + 22422827 CCCGGAGCUCGAGCA-UUUUCUGCAUGAUUUUGCAGUUAAGCCC-----CCAGAGGGC-AAACAGCAUU------- ......(((.(....-((..(((((......)))))..))((((-----.....))))-...))))...------- ( -16.60, z-score = -0.94, R) >droSec1.super_4 4914483 62 - 6179234 -CCCGAAUUCGAGCA-UUUUCUGCAUGAUUUUGCAGUUAAGCCC-----CCAGAGGGCCAAACAGCAUU------- -..((....)).((.-((..(((((......)))))..))((((-----.....))))......))...------- ( -15.90, z-score = -2.03, R) >droYak2.chrX 18795532 68 - 21770863 -CCCGAGCUCGAGCA-UUUUCUGCAUGAUUUUGCAGUUAAGCCC-----CCAGAGGGC-AAACAGCGUUCAGCAUU -.....(((.((((.-((..(((((......)))))..))((((-----.....))))-.......)))))))... ( -22.50, z-score = -3.00, R) >droEre2.scaffold_4690 2844563 61 + 18748788 -ACCGAGCUCGAGCA-UUUUCUGCAUGAUUUUGCAGUUAAGCCC-----CCAGAGGGC-AAACAGCAUU------- -..((....)).((.-((..(((((......)))))..))((((-----.....))))-.....))...------- ( -16.80, z-score = -1.80, R) >droAna3.scaffold_13117 4972236 58 - 5790199 -------UCCAGGCGCUUUUCUGCAUGAUUUUGCAGUUAAGACUAGAGUCCAGAGGGC----CAGCAUU------- -------....(((.((((.(((((......)))))....(((....))).)))).))----)......------- ( -17.40, z-score = -1.52, R) >consensus _CCCGAGCUCGAGCA_UUUUCUGCAUGAUUUUGCAGUUAAGCCC_____CCAGAGGGC_AAACAGCAUU_______ ............((..((..(((((......)))))..))((((..........))))......)).......... (-11.22 = -11.26 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:05 2011