| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,489,312 – 5,489,407 |
| Length | 95 |
| Max. P | 0.618695 |
| Location | 5,489,312 – 5,489,407 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 49.92 |
| Shannon entropy | 0.82746 |
| G+C content | 0.45639 |
| Mean single sequence MFE | -22.35 |
| Consensus MFE | -4.00 |
| Energy contribution | -5.75 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.18 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5489312 95 + 22422827 --ACCAAAUUCAACUGAAUUCCCUUUGCUGCAAGCGAUUAUCUAGCAGCAAA--CGUAUUCCACUUGCA--AUUUGCCAGUCGGUUACAUCAAAUUCAUAU --............((((((...((((((((.((.......)).))))))))--.(((..(((((.((.--....)).))).)).)))....))))))... ( -21.40, z-score = -3.27, R) >droAna3.scaffold_13117 4969252 94 - 5790199 --ACCAAAUUGGCCAGCAAUUCCG--GCUGGGAGAGUCAGCUUCGGAAGAGGCAUGUCUCACCUGUGCGGGACUUCCUAGUGCCGUGAUUCAGGGCCU--- --........((((...(((..((--((((((((((.(((((((....))))).)).))).(((....)))...)))))..))))..)))...)))).--- ( -41.20, z-score = -2.45, R) >droEre2.scaffold_4690 2840625 87 + 18748788 ACAACCUAAACAACCGAAUUCCCAUUGCUGCCAGCGAUAAUCUGGCAGAAAAAACAUAUUCCACUUGCA--CUUUGCCAGUCGGUUAGC------------ ...........((((((..........(((((((.......)))))))...............((.((.--....)).))))))))...------------ ( -20.30, z-score = -2.52, R) >droSec1.super_4 4910537 75 - 6179234 --ACCACAUUCGCCUGAUUUCCCUUUGCUGCAAGCGAUUAUCUAGCAC------------------------UUUGCCACUCAGUUACUUCAAAUUCAUAU --.........((..(((......((((.....))))..)))..))..------------------------............................. ( -6.50, z-score = 0.35, R) >consensus __ACCAAAUUCAACUGAAUUCCCUUUGCUGCAAGCGAUAAUCUAGCAG_AAA__CGUAUUCCACUUGCA__AUUUGCCAGUCGGUUACUUCAAAUUCA___ ...........((((((......(((((.....)))))......(((((.......................)))))...))))))............... ( -4.00 = -5.75 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:05 2011