| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,230,809 – 10,230,950 |
| Length | 141 |
| Max. P | 0.967976 |
| Location | 10,230,809 – 10,230,950 |
|---|---|
| Length | 141 |
| Sequences | 6 |
| Columns | 154 |
| Reading direction | reverse |
| Mean pairwise identity | 73.76 |
| Shannon entropy | 0.48030 |
| G+C content | 0.41314 |
| Mean single sequence MFE | -39.48 |
| Consensus MFE | -18.07 |
| Energy contribution | -17.93 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.967976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10230809 141 - 23011544 ----------AACUCGUAUAAACUGCAUAGUUAGCAUUCGCGAAGCGAUAUCGCACAAACCUGUAAGUGGGAACAUUCCACUUCAUGUCAAUUUCAUGAAAU--CGCUAGGCGUAACC-ACUAGCUUUGGUUCUAAACCAAAGUGGCAACGCCU ----------...((((......(((.......)))...))))((((((.................((((((...))))))((((((.......))))))))--))))((((((..((-(((....(((((.....))))))))))..)))))) ( -41.00, z-score = -3.22, R) >droSim1.chr2L 10012849 141 - 22036055 ----------AACUCAUAUAAACUGCAUAGUUCGCAUUCGCGAGGCGAAAUCGCAAAAACCUGUAAGUGGGAACAUUCCAAUUCAUGUUAAUUUCAUGAAAU--CGCUAGGCGUAACC-ACUUGCUUUGGUUCUAAACCAGUGUGGCAACGCCU ----------.............((((...(((((....)))))(((....))).......))))(((((((....)))..((((((.......))))))..--))))((((((..((-((.....(((((.....))))).))))..)))))) ( -39.40, z-score = -2.46, R) >droSec1.super_3 5655945 141 - 7220098 ----------AACUCAUAUAAACUGCAUAGUUCGCAUUCGCGUGGCGAAAUCGCAAAAACCUGUAAGUGGGAACAUUCCAAUUCAUGUUAAUUUCAUGAAAU--CGCUAGGCGUAACC-AUUUGCUUUGGUUCUAAACCAGUGUGGCAACGCCU ----------..............((...((((.((((..(((.(((....)))....))..)..)))).)))).......((((((.......))))))..--.)).((((((..((-((.....(((((.....))))).))))..)))))) ( -38.30, z-score = -2.11, R) >droYak2.chr2L 12905181 141 - 22324452 ----------AAUUCUUUUUAGCUGUAAAGUUCGUAUGCGAGAAGCGAAAGCGCAUAAACCUGUAAGUGGAAACAAUCCAAUUCAUGUUCAUUUUAUGAAUU--CGCUAGGCGUAACC-ACUUGAUUUUGUUCUAAAAGAGUGUGGCAACGCCU ----------.........(((((((....((((....))))..((....)))))............((....))....((((((((.......))))))))--.))))(((((..((-((....((((.......))))..))))..))))). ( -33.70, z-score = -1.02, R) >droEre2.scaffold_4929 10836935 141 - 26641161 ----------AAGUCUUUCUAACAGCAUAGUUCGCAUUCGAGAAGCGAAAGCGCAUAAACCUGUAAGUGGAAACAAUCCAAUUCAUGUUCAUUUUAUGAAAU--CCCUAGGCGUAACC-ACUCGCUUUUGUUCUAAAACAGUGUGGCAACGCCU ----------........((.((((....((.(((.((((.....)))).))).))....)))).))((((.....)))).((((((.......))))))..--....((((((..((-((......(((((....))))).))))..)))))) ( -32.40, z-score = -1.39, R) >droAna3.scaffold_12916 14062672 152 - 16180835 CACUUUCUAAGGACGGGCCCAAUUUUAUUGGCUACACUUUUUUUUUUAUUUUAGGAAAGUGUAUGGAUGGCGU--UCUCAUAUCAUAUUCAUUUCCUGAAAUGGUGAGAGGCGUAGCCAACUUUGUUUAGUUCUAACCCGAGGUGGCAACGCCU .............((((............((((((.((((((...(((((((((((((..((((((((((...--..)))).))))))...))))))))))))).)))))).))))))((((......))))....))))(((((....))))) ( -52.10, z-score = -4.49, R) >consensus __________AACUCAUAUAAACUGCAUAGUUCGCAUUCGCGAAGCGAAAUCGCAAAAACCUGUAAGUGGGAACAUUCCAAUUCAUGUUAAUUUCAUGAAAU__CGCUAGGCGUAACC_ACUUGCUUUGGUUCUAAACCAGUGUGGCAACGCCU ...........................................((((....................((((.....)))).((((((.......))))))....))))((((((..((.((.....(((((.....))))).))))..)))))) (-18.07 = -17.93 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:51 2011