| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,442,865 – 5,442,960 |
| Length | 95 |
| Max. P | 0.881213 |
| Location | 5,442,865 – 5,442,960 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 89.41 |
| Shannon entropy | 0.22905 |
| G+C content | 0.31837 |
| Mean single sequence MFE | -16.48 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881213 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 5442865 95 - 22422827 GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAACUCACUUGCCACGC----------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))........................----------- ( -16.00, z-score = -1.39, R) >droSim1.chrX 4207062 95 - 17042790 GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAACUCACUUGCCACGC----------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))........................----------- ( -16.00, z-score = -1.39, R) >droSec1.super_4 4865575 95 + 6179234 GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAACUCACUUGCCACGC----------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))........................----------- ( -16.00, z-score = -1.39, R) >droYak2.chrX 18744409 95 + 21770863 GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAACUCACUUGCCACGC----------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))........................----------- ( -16.00, z-score = -1.39, R) >droEre2.scaffold_4690 2793059 99 - 18748788 GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAACUCACUUGCCUGCCACGC------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))............................------- ( -16.00, z-score = -0.89, R) >droAna3.scaffold_13117 4923665 98 + 5790199 GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAAUUCACUCGCCAGGACUC-------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))...........................-------- ( -16.00, z-score = -1.13, R) >dp4.chrXL_group1a 1053237 97 + 9151740 GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAACUCACUCGCUGGGCGG--------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))................(((...))).--------- ( -17.50, z-score = -0.99, R) >droWil1.scaffold_181096 10988469 106 - 12416693 GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAAUCCCCCAAGAGCCAGAGCCAGAGCC ..............((.(((((((....((((((.....))))))..........(((((((........))))))).........)))))))))........... ( -17.20, z-score = -1.24, R) >droVir3.scaffold_12928 5030417 96 - 7717345 GGCGACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAAUUCACUUCAUGCCAU---------- ((((......(((((((((.........((((((.....))))))....((((....)))).)))))))))(((....))).........))))..---------- ( -18.60, z-score = -1.52, R) >droMoj3.scaffold_6359 3535598 93 - 4525533 GGCGACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAAUUCACUUCAUGC------------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))......................------------- ( -16.00, z-score = -0.71, R) >droGri2.scaffold_14853 9726437 87 - 10151454 GGCGACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAAUUCACU------------------- ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))................------------------- ( -16.00, z-score = -0.99, R) >consensus GACAACAUUUUUUAUGCGCUUUUGAGCAAAUUAGAUUUCCUAAUUAAAUUUUCUAGUGAAAUGCGCAUAAAUUUCAUAAAACUCACUUGCCACGC___________ ..........(((((((((.........((((((.....))))))....((((....)))).)))))))))................................... (-16.00 = -16.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:18:01 2011