| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,413,644 – 5,413,702 |
| Length | 58 |
| Max. P | 0.928975 |
| Location | 5,413,644 – 5,413,702 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 91.91 |
| Shannon entropy | 0.11083 |
| G+C content | 0.37215 |
| Mean single sequence MFE | -10.90 |
| Consensus MFE | -11.83 |
| Energy contribution | -11.17 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.16 |
| Mean z-score | -0.76 |
| Structure conservation index | 1.09 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5413644 58 - 22422827 CUUGUAUGGAAAUGGAAAUUACCCUUUAAAGGACAUGGUUUUUCUCUGUACACAUAGG ..((((((((...((((((((.(((....)))...)))))))).))))))))...... ( -10.50, z-score = -0.31, R) >droSim1.chrX 4181633 57 - 17042790 CUUGUAUGGAAA-AGAAAUUACCCUUUAAAGGACAUGGUUUUUCUCUGUGCACACUGC ..((((((((..-((((((((.(((....)))...)))))))).))))))))...... ( -10.90, z-score = -0.76, R) >droSec1.super_4 4830075 57 + 6179234 CUUGUAUGGAAA-AGAAAUUACCCUUUAAAGGACAUAGUUUUUCUCUGUGCACACUGC ..((((((((..-((((((((.(((....)))...)))))))).))))))))...... ( -11.30, z-score = -1.21, R) >consensus CUUGUAUGGAAA_AGAAAUUACCCUUUAAAGGACAUGGUUUUUCUCUGUGCACACUGC ..((((((((...((((((((.(((....)))...)))))))).))))))))...... (-11.83 = -11.17 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:57 2011