| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,406,500 – 5,406,628 |
| Length | 128 |
| Max. P | 0.854037 |
| Location | 5,406,500 – 5,406,628 |
|---|---|
| Length | 128 |
| Sequences | 6 |
| Columns | 144 |
| Reading direction | forward |
| Mean pairwise identity | 71.19 |
| Shannon entropy | 0.52167 |
| G+C content | 0.45906 |
| Mean single sequence MFE | -35.05 |
| Consensus MFE | -21.50 |
| Energy contribution | -21.03 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5406500 128 + 22422827 UCCACCUGUGCGAAAGGUGAUUGCAUCGAGCUUAUGCCGGCAUAAUGCCUUUUUGUGAUGAGU---GCACCUUUCAUCGCUAAAA-------CCUCGUUUAGAACAGUUCAUUGC-UGGCAUUUGGAUU-----GAGUUCUUAA ((((...((((((((((((....(((((.((....)))(((.....))).......))))...---.))))))))....(((((.-------.....)))))..((((.....))-)))))).))))..-----.......... ( -37.40, z-score = -1.75, R) >droSim1.chrX 4174665 127 + 17042790 CCCACCUGUGCGAAAGGUGAUUGCAUCGAGCUUAUGCCGGCAUAAUGCCAUUU-GUGAUGAGU---GCACCUUUCAUCGCUAAAA-------CCUCUUUUAGAACAGCUCGUUGC-UGUCAUCUGGAUU-----GAGUUCUUAA .......(((.((((((((....(((((.((....)))(((.....)))....-..))))...---.))))))))..))).....-------.(((.(((((((((((.....))-)))..))))))..-----)))....... ( -38.70, z-score = -2.45, R) >droSec1.super_4 4823254 127 - 6179234 CCCACCUGUGCGAAAGGUGAUUGCAUCGAGCUUAUGCCGGCAUAAUGCCAUUU-GUGAUGAGU---GCACCUUUCAUCGCUAAAA-------CCUCUUUUAGAACAGCUCGUUGC-UGUCAUCUGGAUU-----GAGUUCUUAA .......(((.((((((((....(((((.((....)))(((.....)))....-..))))...---.))))))))..))).....-------.(((.(((((((((((.....))-)))..))))))..-----)))....... ( -38.70, z-score = -2.45, R) >droYak2.chrX 18710516 137 - 21770863 CCCACCUGUGCGAAAAGUGAUUGCAUCGAGUUUAUGCCGGCAUAAUGCCAUUU-GUGAUGCACUAAACGCUUUUCAUCGCUAAAAACCAUCAUCGCUUUUAGAACAGCUCAUUGC-UGCCAUCUGGAUU-----GAGUUCUUAA .......(((.((((((((..(((((((.((....)))(((.....)))....-..)))))).....))))))))..)))............(((..((((((.((((.....))-))...)))))).)-----))........ ( -31.40, z-score = -0.34, R) >droEre2.scaffold_4690 2759714 132 + 18748788 CCCACCUGUGCGAAAGGUGAUUGCAUCGAGUUUAUGCUGCCAUAAUGCCAUUU-GUGAUGAGU---GCACUUUUCAUCGCUAAAA-------CCACUUUUACAACAGCUCACUGC-UGCCAUCUGGAUUUUCUGGAGUUCUUGA ..(((((.......)))))......(((((.....(((.(((.((..(((...-((((((((.---......)))))))).....-------............((((.....))-)).....)))...)).)))))).))))) ( -31.70, z-score = -0.24, R) >droAna3.scaffold_13117 4893696 116 - 5790199 CCCACCUGAG-GCAGAGUGCAUAUCUCUCCUCGCCAGUGGCA-GGGGCCAUAAAGGACUUUAUCGGGAUAUUUCCAUUCCAGGAG--------CUUAAUCACAACAUCCGAGGAUGCACCUUCUGC------------------ ..........-((((((((((......(((((....(((((.-...)))))...(((.......(((((......)))))..((.--------.....))......)))))))))))))..)))))------------------ ( -32.40, z-score = 0.16, R) >consensus CCCACCUGUGCGAAAGGUGAUUGCAUCGAGCUUAUGCCGGCAUAAUGCCAUUU_GUGAUGAGU___GCACCUUUCAUCGCUAAAA_______CCUCUUUUAGAACAGCUCAUUGC_UGCCAUCUGGAUU_____GAGUUCUUAA ..(((((.......)))))...(((..(((((......(((.....))).....((((((((..........)))))))).........................)))))..)))............................. (-21.50 = -21.03 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:56 2011