| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,219,258 – 10,219,361 |
| Length | 103 |
| Max. P | 0.580511 |
| Location | 10,219,258 – 10,219,361 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 55.36 |
| Shannon entropy | 0.81384 |
| G+C content | 0.31916 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -6.61 |
| Energy contribution | -7.69 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.74 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10219258 103 - 23011544 UUCGAGUAUUUGAUUACACCAUUCAGCAAUAUAUAUUGACUGAAACUGAAUGGAUAUUGAAGCGUGGCAAUGAAUCAGUUUUAUUGUUAUUCUUUCCUUAGGA .....(((......))).((((((((((((....)))).......)))))))).....((((.(((((((((((.....))))))))))).))))........ ( -22.31, z-score = -1.38, R) >droPer1.super_3 4490808 99 + 7375914 UCCGCGUAUCGAUUACAACAAUUUUGCGGUGUAUUUUUACUCAAGCGAAAAGCAAACACAAGAAAAGAAAAAAAGCGGGUUUCACACAGUUGUUUGGAU---- ((((((((.....))).....((((((...(((....)))....))))))........................))))).((((.((....)).)))).---- ( -17.50, z-score = 0.04, R) >droAna3.scaffold_12916 14050299 85 - 16180835 -----------AAUUAAAAAGUAAUUAAAUAACCAUCCAUACGUAUAAAAUAUAUAUAACAUUUGGUGCGUCAAGAAAUUUAACGAUCGGCUGCUA------- -----------........((((........((((.......(((((.....)))))......)))).(((.((....))..)))......)))).------- ( -6.12, z-score = 1.52, R) >droSec1.super_3 5644323 103 - 7220098 AUCGAGUAUUUAAUUACAUUAUUCAGCAAUAUUUAUUGACUGAAACUGAAUGGAUAUUGAAGCGUGGCAAUGAAUCAGUUUUAUUGCCAUUGCUUCCUUAGGA ....((((((((.(((.....(((((((((....)))).)))))..))).))))))))((((((((((((((((.....)))))))))).))))))....... ( -29.60, z-score = -3.77, R) >droSim1.chr2L 10001078 103 - 22036055 AUCGAGUAUUUAAUUACAUUAUUCAGCAAUAUUUAUUGACUGAAACUGAAUGGAUAUUGAAGCGUGGCAAUGAAUCAGUUUUACUGCUAUUGUUUCCUUAGGA ....((((((((.(((.....(((((((((....)))).)))))..))).))))))))(((((((((((.((((.....)))).))))).))))))....... ( -21.20, z-score = -1.14, R) >consensus AUCGAGUAUUUAAUUACACAAUUCAGCAAUAUAUAUUGACUGAAACUGAAUGGAUAUUGAAGCGUGGCAAUGAAUCAGUUUUACUGCCAUUGUUUCCUUAGGA ..................((((((((...................))))))))..........(((((((((((.....)))))))))))............. ( -6.61 = -7.69 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:49 2011