| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,367,273 – 5,367,363 |
| Length | 90 |
| Max. P | 0.810596 |
| Location | 5,367,273 – 5,367,363 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 73.81 |
| Shannon entropy | 0.47688 |
| G+C content | 0.44860 |
| Mean single sequence MFE | -16.88 |
| Consensus MFE | -12.09 |
| Energy contribution | -12.65 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5367273 90 - 22422827 -------CGGUGAGACCGCCACUCUCAUUCCUACAUUUUAUUUGCAAUUCAAUUUGAAUAACACCGGCUAAGCCGUAAAAUGGCUGCCAUUCCGCAU -------.((((....))))......................(((.((((.....))))......(((..((((((...))))))))).....))). ( -20.20, z-score = -1.66, R) >droSim1.chrX 4138744 77 - 17042790 -------------------CACUC-CAUUUCUCCAUUUUAUUUGCAAUUCAAUUUGAAUACCACCGGCUAAGCCGUAAAAUGGCUGCCAUUCCGCAU -------------------.....-.................(((.((((.....))))......(((..((((((...))))))))).....))). ( -15.10, z-score = -2.19, R) >droSec1.super_4 4789883 77 + 6179234 -------------------CACUC-CAUUUCUCCAUUUUAUUUGCAAUUCAAUUUGAAUACCACCGGCUAAGCCGUAAAAUGGCUGCCAUUCCGCAU -------------------.....-.................(((.((((.....))))......(((..((((((...))))))))).....))). ( -15.10, z-score = -2.19, R) >droYak2.chrX 18675070 89 + 21770863 -------CAGUGAGACUGCCACUC-CAUGCCCACAUUUUAUUUGCAAUUCAAUUUGAAUACCGCCGGCUAAGCCGUAAAAUGGCUGCCAUUCCGCAU -------.((((.......)))).-.................(((.((((.....))))......(((..((((((...))))))))).....))). ( -17.00, z-score = 0.11, R) >droEre2.scaffold_4690 2723368 89 - 18748788 -------CGGUAAGACUGCGGCUC-CAUUCCAGCAUUUUAUUUGCAAUUCAAUUUGAAUACCAACGGCUAAGCCGUAAAAUGGCUGCCAUUCCGCAU -------.........(((((...-.......(((.......))).((((.....))))......(((..((((((...)))))))))...))))). ( -21.40, z-score = -0.76, R) >droAna3.scaffold_13117 4861682 93 + 5790199 UAUUGCAAGGCACCUCCUCCGUCUUCCGUCCUCCGUCUUAUAACCAAUUCAAUUCGAAUGCCA----CAAAGCCGUAAACUGGCUCUAGCUCUGGCU ....(.(((((.........))))).)...................((((.....))))((((----...(((((.....))))).......)))). ( -12.50, z-score = 0.75, R) >consensus _______CGGU_AGAC_GCCACUC_CAUUCCUCCAUUUUAUUUGCAAUUCAAUUUGAAUACCACCGGCUAAGCCGUAAAAUGGCUGCCAUUCCGCAU ..........................................(((.((((.....))))......(((..((((((...))))))))).....))). (-12.09 = -12.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:50 2011