| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,366,207 – 5,366,315 |
| Length | 108 |
| Max. P | 0.714444 |
| Location | 5,366,207 – 5,366,315 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 71.68 |
| Shannon entropy | 0.44867 |
| G+C content | 0.44189 |
| Mean single sequence MFE | -14.88 |
| Consensus MFE | -11.07 |
| Energy contribution | -11.26 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.714444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5366207 108 - 22422827 GCACUCCAGUCGCCAGUCUCCUAUCCCUUUCAAUUUCUCUGUGUCUCUUGCCGGUUUCCUCGUUGUUU-UUACAUAACACGAGUUUAAAAUCUAUGCUUGCCUACUAAG (((....((..(((((......................))).))..))....(((((.(((((.(((.-......))))))))....)))))..)))............ ( -11.25, z-score = 0.00, R) >droEre2.scaffold_4690 2722465 103 - 18748788 GCAGCUCGAGUGUC--UAGUCUAUCCCUUUCAAUUUCCUGUGGCGUUUCGCCUGCUUCCUCGUUGUUUCUUACGCAACACGGGUUUUAAAUCUAUGUCCGCCCAG---- ((((..(((..(((--(((..................))).)))...))).))))......(((((.......)))))..((((...............))))..---- ( -15.83, z-score = 0.65, R) >droSec1.super_4 4788901 86 + 6179234 ----------------------AUCCCUUUCAAUUUCUCUGUGUCUUUUGCCGGCUUCCUCGUUGUUU-UUACGUAACACGAGUUUAAAAUCUAUGCUGGCGCACUAAG ----------------------..............((..((((.....((((((...(((((.(((.-......))))))))............))))))))))..)) ( -17.56, z-score = -2.38, R) >droSim1.chrX 4137759 86 - 17042790 ----------------------AUCCCUUUCAAUUUCUCUGUGUCUUUUGCCGGCUUCCUCGUUGUUU-UUACGUAACACGAGUUUAAAAUCUAUGCUGGCCCACUAAG ----------------------..............((..(((......((((((...(((((.(((.-......))))))))............)))))).)))..)) ( -14.86, z-score = -1.94, R) >consensus ______________________AUCCCUUUCAAUUUCUCUGUGUCUUUUGCCGGCUUCCUCGUUGUUU_UUACGUAACACGAGUUUAAAAUCUAUGCUGGCCCACUAAG .................................................((((((...(((((.(((........))))))))............))))))........ (-11.07 = -11.26 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:49 2011