| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,329,392 – 5,329,486 |
| Length | 94 |
| Max. P | 0.542328 |
| Location | 5,329,392 – 5,329,486 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 64.72 |
| Shannon entropy | 0.66643 |
| G+C content | 0.51159 |
| Mean single sequence MFE | -28.71 |
| Consensus MFE | -9.74 |
| Energy contribution | -10.28 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5329392 94 + 22422827 -------CAGCGGCAGCUGGGAAUGGAU-GGACAGAAAAGUGCAGCUU-GCAAGGUCAACAUGGCGUAUGCGCGAUGUUU---GAGGACUUUCAAACACCCGCUGU -------((((((..((((.(..((...-...))......).))))((-(.(((((((((((.(((....))).))))).---...)))))))))....)))))). ( -31.40, z-score = -1.07, R) >droPer1.super_15 1106520 94 - 2181545 ----CACCAACAGAUGAAAAAAGGAAG---GAUGAAAAAGUGCUAGGU-GCUAGUACAACGUUGCGUAUGCGCAAUGUUGA--GGUGCCCCAAAAUUAGCAACG-- ----((((...................---.........(((((((..-.)))))))(((((((((....)))))))))..--)))).................-- ( -24.50, z-score = -1.90, R) >dp4.chrXL_group1a 471026 94 - 9151740 ----CACCAACAGAUGAGAAAAGGAAG---GAUGAAAAAGUGCAAGGU-GAAAGUACAACGUUGCGUAUGCGCAAUGUUGA--GGUGCCCAAAAAUCAGCAACG-- ----((((..................(---.((......)).).....-.......((((((((((....)))))))))).--)))).................-- ( -20.00, z-score = -0.99, R) >droAna3.scaffold_13117 4816588 98 - 5790199 CAAGAGUCUGGCAGGACGAAAUGAGGA---GACAA-AAAGUGCAGUUU-GCAAGGACAACGCUGCGUAUGCGCAAUGCCGAAGGAGGAGGUUGAGGCAGAGGG--- ......((((.(..(((.......(..---..)..-...(((((...(-(((.(.....)..))))..)))))....((......))..)))..).))))...--- ( -22.80, z-score = -0.34, R) >droEre2.scaffold_4690 2683019 96 + 18748788 CAGCGGGCAGCGGGCGCAGGGUGGAAU---GACA--AAAGUGCAGUUUUGCAAGGCCAACAUUGCGUAUGCGUGAUGUUU---GGGAACUUUAAUGCACCCGCU-- ........((((((.(((..(..((((---..((--....))..))))..)....(((((((..((....))..))).))---)).........))).))))))-- ( -33.70, z-score = -0.73, R) >droYak2.chrX 18630707 98 - 21770863 -CAGCGGCAGCGGCAGCAUGAUGGAAGCAGGACAA-AAAGUGCAGUUG-GCAAGGUCAACACGGCGUAUGCGCGAUGUUG---GAGGACUUUAAUACACCCGCU-- -.(((((....(.((((....((....))(.((..-...)).).))))-.)(((.((((((..(((....)))..)))))---)....)))........)))))-- ( -25.50, z-score = 1.06, R) >droSec1.super_4 4752707 89 - 6179234 -------CAGCGGGAGCGGGUUGUGUG---GACAG-AAAGUGCAGUUU-GCAAGGUCAACAUUGCGUAUGCGCGAUGUUU---GAGGACUUUAAUACACCCGCU-- -------.((((((.(((..(((..(.---.....-...)..)))..)-))(((((((((((((((....))))))))).---...))))))......))))))-- ( -35.70, z-score = -3.49, R) >droSim1.chrX 4104843 89 + 17042790 -------CAGCGGGAGCGGGUUGUGUG---GACAG-AAAGUGCAGUUU-GCAAGGUCAACAUUGCGUAUGCGCAAUGUUG---GAGGACUUUAAUACACCCGCU-- -------.((((((.(((..(((..(.---.....-...)..)))..)-))(((.(((((((((((....))))))))))---)....))).......))))))-- ( -36.10, z-score = -3.66, R) >consensus _______CAGCGGGAGCGGGAUGGAAG___GACAA_AAAGUGCAGUUU_GCAAGGUCAACAUUGCGUAUGCGCAAUGUUG___GAGGACUUUAAUACACCCGCU__ ........................................(((......))).....(((((((((....)))))))))........................... ( -9.74 = -10.28 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:44 2011