| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,327,300 – 5,327,375 |
| Length | 75 |
| Max. P | 0.958769 |
| Location | 5,327,300 – 5,327,375 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 61.65 |
| Shannon entropy | 0.69905 |
| G+C content | 0.54388 |
| Mean single sequence MFE | -26.15 |
| Consensus MFE | -11.00 |
| Energy contribution | -10.89 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5327300 75 - 22422827 -----AGAAAUCGGGCACAGUUGCCUGGGGUACUGGGAACA-GUGUUCGCAGCCGCUUAGUGUUCCCACUGCUGUUCCCAG -----.....(((((((....)))))))....(((((((((-((....((....))..((((....))))))))))))))) ( -31.30, z-score = -2.39, R) >droEre2.scaffold_4690 2680919 74 - 18748788 -----GGAGUUCGGGGACAGUUGCUUGGGGCACUGCAA--AGGUGUUCCCACCCGCAUGGUGUUCCCACUGCUGUUCCCAG -----.......(((((((((....(((((((((((..--.((((....)))).))..)))).)))))..))))))))).. ( -32.30, z-score = -1.78, R) >droYak2.chrX 18628151 76 + 21770863 -----AGAAUGUGGGAACAGUGGCUUGGGGUACUGCAAGCAUGUGUUCCCACCCGCAUGGUGUUCCCACUACUGUUCCCAG -----......((((((((((((..(((((....(((..((((((........)))))).)))))))))))))))))))). ( -34.10, z-score = -3.11, R) >droSec1.super_4 4750745 66 + 6179234 -----ACAAAUCGGGCACAGUUGCCUGGGGUAC----------UGUUCCCAGUCGCAUAGUGUUCCCACUGCUGUUCCCAG -----.......(((.((((((((((((((...----------...))))))..))).((((....))))))))).))).. ( -24.80, z-score = -2.74, R) >droSim1.chrX 4102780 66 - 17042790 -----ACAAAUCGGGCACAGUUGCCUGGGGUAC----------UGUUCACAGUCGCGCAGUGUUCCCACUGCUGUUCCCAG -----.......(((.(((((.....((..(((----------(((.(......).))))))..))....))))).))).. ( -24.80, z-score = -2.17, R) >dp4.chrXL_group1a 467219 79 + 9151740 AGCGGAGGGGUUUCUUUCGGUUGAGGAUAGCAGUGAUAGCA-GCAGCUGUUUUGGAAAACUGUACACAUU-CUGUUCCCAG .(.((((.((.......(((((.((((((((.((.......-)).))))))))....)))))........-)).))))).. ( -17.76, z-score = 0.82, R) >droPer1.super_15 1101585 79 + 2181545 AGCGGAGAGUUUUCUUUCGGUUGAGGAUAGCAGUGAUAGCA-GCAGCUGUUUUGGAAAACUGUACACAUU-CUGUUCCCAG (((.(((((....))))).)))(.((((((.((((...(((-(...((.....))....))))...))))-)))))).).. ( -18.00, z-score = 0.34, R) >consensus _____AGAAAUCGGGCACAGUUGCCUGGGGUACUG__A_CA_GUGUUCCCAGUCGCAUAGUGUUCCCACUGCUGUUCCCAG ............(((.(((((...((((((................))))))......((((....))))))))).))).. (-11.00 = -10.89 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:44 2011