| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,327,027 – 5,327,147 |
| Length | 120 |
| Max. P | 0.876077 |
| Location | 5,327,027 – 5,327,147 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.57 |
| Shannon entropy | 0.35181 |
| G+C content | 0.45755 |
| Mean single sequence MFE | -36.60 |
| Consensus MFE | -20.62 |
| Energy contribution | -20.70 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.876077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5327027 120 + 22422827 GCAGAAUGUUGACUGCAUUCUCUCCUUCAAGUGGGUACAGUUUGUGGUCGCAACUGUUCUCAGCUGCGGAGGGGAAAGCCUGACAAUCAGAGAUCCAGCAUUCUUGUAAUUAAAUGUAAU (((((((((((...((.((.((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))))(((.....))).....)))))))).)))............. ( -38.00, z-score = -1.84, R) >droSim1.chrX 4102511 107 + 17042790 ACAG------GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGAAGGGGAAAUCCUGACUAUCAGAUACCCAGCAUUCUUGUAAACAU------- ((((------((.(((..((((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))..(((.....))).......))).))))))......------- ( -39.20, z-score = -3.69, R) >droSec1.super_4 4750476 107 - 6179234 GCAG------GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGGAGGGGAAAUCCUGACUAUCACAUACCCAGCAUUUUUGUAAACAU------- ((((------((.(((..((((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))...((.....))........))).))))))......------- ( -32.90, z-score = -1.64, R) >droYak2.chrX 18627928 113 - 21770863 GAAGGAUGCGGACUGGAUGUUCUCCUUCAAGUGGGCACACUUUGUGGCUGAAACUGUUCUCAGCAAUGGAGGGGAAGUUCCAACUAUCCGAUAUCCAGAAUUCUGUUAAAAGU------- ...(((((((((.((((..((((((((((((((....)))).....(((((........)))))..))))))))))..))))....)))).))))).................------- ( -40.50, z-score = -2.95, R) >droEre2.scaffold_4690 2680654 113 + 18748788 GAAGGAUGUUGGCUGAAUUUUCUCCUUCAAGUGGGUACAUUUUGUGGCUGCAAGUGUUCUCAGCAACGGAGGGGAAAUCCUGACUAUCACAUACCCAGCAUUCU-GUAAAAAAU------ ..((((((((((......(((((((((((((((....))))).((.((((..((....)))))).))))))))))))...((.....)).....))))))))))-.........------ ( -32.40, z-score = -1.26, R) >consensus GCAG_AUG__GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGGAGGGGAAAUCCUGACUAUCAGAUACCCAGCAUUCUUGUAAAAAU_______ ..................((((((((((..((((.(((.....))).))))..(((....)))....))))))))))........................................... (-20.62 = -20.70 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:43 2011