| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,305,419 – 5,305,517 |
| Length | 98 |
| Max. P | 0.599902 |
| Location | 5,305,419 – 5,305,517 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.65 |
| Shannon entropy | 0.33468 |
| G+C content | 0.42102 |
| Mean single sequence MFE | -19.09 |
| Consensus MFE | -13.23 |
| Energy contribution | -13.29 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5305419 98 - 22422827 UCUAUGUUCUAUCAACGAUCUUCGUGAGUUAAUCAGCAAAAAAGAGCUCACGUUCGGGAUUUCCUUACC----UACA---CGCAGAG-AAAAAGAUCACUUCAUAA----- ................((((((((((((((..............))))))))...(((....)))....----....---.......-...)))))).........----- ( -16.74, z-score = -0.28, R) >droSim1.chrX 4082023 96 - 17042790 --UCAAUCCCAUCACCGAUCUUCGUGAGUUAAUCAGCAAAA---AGCUCACGUUCGGGGUUUCCUUACCCACCUACA---CCCAGAG--AAAAGAUCACUUCAUAA----- --..............((((((((((((((...........---))))))))....((((......)))).......---.......--..)))))).........----- ( -21.00, z-score = -2.91, R) >droSec1.super_4 4729170 101 + 6179234 --UUUAUCCCAUCAACGAUCUUCGUGAGUUAAUCAGCAAAA---AGCUCACGUUCGGGGUUUCCUUACCCACCUACA---CCCAGAG--AAAAGAUCACUUCAUACCAUAA --..............((((((((((((((...........---))))))))....((((......)))).......---.......--..)))))).............. ( -21.00, z-score = -2.94, R) >droYak2.chrX 18606563 97 + 21770863 ------UCCUAUCAACGAUCUUCGUGUGUUAAUCAGCAAAC---AGCUCGCAUUCGGGGUUUCCUUACACGCAGAGAAAUGACAAAGAGGAAAGAUCACUUCAUAA----- ------((((.(((....(((..((((((.....((.((((---..((((....)))))))).)).))))))..)))..))).....))))...............----- ( -17.60, z-score = 0.20, R) >consensus __U_UAUCCCAUCAACGAUCUUCGUGAGUUAAUCAGCAAAA___AGCUCACGUUCGGGGUUUCCUUACCCACCUACA___CCCAGAG__AAAAGAUCACUUCAUAA_____ ................((((((.(((((((..............)))))))....(((....)))..........................)))))).............. (-13.23 = -13.29 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:40 2011