| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,209,709 – 10,209,774 |
| Length | 65 |
| Max. P | 0.940883 |
| Location | 10,209,709 – 10,209,774 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 96.96 |
| Shannon entropy | 0.05388 |
| G+C content | 0.34558 |
| Mean single sequence MFE | -11.38 |
| Consensus MFE | -11.38 |
| Energy contribution | -11.38 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940883 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10209709 65 + 23011544 GCGGUGGCAAAUGGAGACAUUAAGAACUAAGGCACAUAAAUACGUAUGCAAAUGUAUAUAUAUAC-- ((..(((..((((....)))).....)))..))......(((..(((((....)))))..)))..-- ( -12.10, z-score = -1.97, R) >droEre2.scaffold_4929 10815721 65 + 26641161 GCGGUGGCAAAUGAAGACAUUAAGAACUAAGGCACAUAAAUACGUAUGCAAAUGUAUAUAUAUAC-- ((..(((..((((....)))).....)))..))......(((..(((((....)))))..)))..-- ( -7.80, z-score = -0.07, R) >droYak2.chr2L 12883516 67 + 22324452 GCGGUGGCAAAUGGAGACAUUAAGAACUAAGGCACAUAAAUACGUAUGCAAAUGUAUAUAUAUAUAC ((..(((..((((....)))).....)))..))......(((..(((((....)))))..))).... ( -12.10, z-score = -1.77, R) >droSec1.super_3 5634821 65 + 7220098 GCGGUGGCAAAUGGAGACAUUAAGAACUAAAGCACAUAAAUACGUAUGCAAAUGUAUAUAUAUAC-- ((..(((..((((....)))).....)))..))......(((..(((((....)))))..)))..-- ( -12.80, z-score = -2.40, R) >droSim1.chr2L 9991543 65 + 22036055 GCGGUGGCAAAUGGAGACAUUAAGAACUAAGGCACAUAAAUACGUAUGCAAAUGUAUAUAUAUAC-- ((..(((..((((....)))).....)))..))......(((..(((((....)))))..)))..-- ( -12.10, z-score = -1.97, R) >consensus GCGGUGGCAAAUGGAGACAUUAAGAACUAAGGCACAUAAAUACGUAUGCAAAUGUAUAUAUAUAC__ ((..(((..((((....)))).....)))..))......(((..(((((....)))))..))).... (-11.38 = -11.38 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:49 2011