| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,305,187 – 5,305,285 |
| Length | 98 |
| Max. P | 0.832913 |
| Location | 5,305,187 – 5,305,285 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 76.18 |
| Shannon entropy | 0.37762 |
| G+C content | 0.50250 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -16.86 |
| Energy contribution | -18.18 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5305187 98 - 22422827 -----UCUUGCAGCAUUUUCUCUUCGAGUGCAGACUAUAUUUUUGGGUAAACGCCGUGCUGAUGUCUUCAGCUUCUCGGCGGAUACUUCCUUAUCCGAGCGCU -----....((.((((((.......))))))...........((((((((..((((.(((((.....)))))....))))(((....)))))))))))))... ( -32.10, z-score = -2.61, R) >droSim1.chrX 4081779 103 - 17042790 UACCAUCUUGCAGCUUUUUUUCUUCGAGUGUAGACCACAUUUUCGGGCACAUUCGGUGCGGAUGUCUUCAGCUUCUCGGCGGAUACUUCCUUAUCCGAGCGCU ...(((((.(((...........((((((((...((........))..)))))))))))))))).....(((..(((((.(((....)))....))))).))) ( -26.80, z-score = -0.82, R) >droSec1.super_4 4728926 103 + 6179234 UACCAUCUUGCAGCUUUUUUUCUUCGAGUGUAGACCACAUUUUUGGUCACAUUCGGUGCGGAUGUCUUCAGCUUCUCGGCGGAUACUUCCUUAUCCGAGCGCU ...(((((.(((...........((((((((.(((((......))))))))))))))))))))).....(((..(((((.(((....)))....))))).))) ( -32.60, z-score = -3.28, R) >droEre2.scaffold_4690 2659236 84 - 18748788 -----------------GCCCCACUUGAUGU--UCCACAUUUUCGGGUACACUCGGUGCGGAUGUCUUCAGCCACUCGGUGGAUACUUCCUUAUCCGAGCGCC -----------------((((.....((((.--....))))...))))......(((((((.((....)).))..((((.(((....)))....))))))))) ( -25.00, z-score = -1.21, R) >consensus _____UCUUGCAGCUUUUUCUCUUCGAGUGUAGACCACAUUUUCGGGCACACUCGGUGCGGAUGUCUUCAGCUUCUCGGCGGAUACUUCCUUAUCCGAGCGCU ........................(((((((.((((........)))))))))))(((((((((......(((....)))(((....))).)))))..)))). (-16.86 = -18.18 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:40 2011