| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,303,157 – 5,303,247 |
| Length | 90 |
| Max. P | 0.867276 |
| Location | 5,303,157 – 5,303,247 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Shannon entropy | 0.32497 |
| G+C content | 0.38847 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -11.68 |
| Energy contribution | -11.68 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5303157 90 + 22422827 ---AAGUUAAAUGGCAAAGAAACUGCAUCAUCAUAGAUACAUAGAUAUGUAUCCGCCA-----GUACG-GUAUCUAUGAAAUAGCCGAAACCCAUGUGU ---........((((...........(((......))).(((((((((((((......-----)))).-))))))))).....))))............ ( -17.80, z-score = -1.32, R) >droSim1.chrX 4079897 83 + 17042790 AAGGUAAAAAAUGGCAAAGAAACUGCAUCAUCAUAGAUA--------UGUCUCCGCCA-----GUUUG-GUAUCUAUGAAAUAGCCGAAACCAAAGU-- ..(((......((((...((.......)).(((((((((--------(..((.....)-----)....-))))))))))....))))..))).....-- ( -15.20, z-score = -1.06, R) >droSec1.super_4 4727095 80 - 6179234 AAGGUAA---AUGGCAAAGAAACUGCAUCAUCAUAGAUA--------UGUCUCCGCCA-----GUUUG-GUAUCUAUGAAAUAGCCGAAACCAAAGU-- ..(((..---.((((...((.......)).(((((((((--------(..((.....)-----)....-))))))))))....))))..))).....-- ( -17.20, z-score = -1.69, R) >droYak2.chrX 18604406 86 - 21770863 ---UUGGUAAAUGGCAAAGAAACUGCAUCAUCAUAGAUA--------UGUCUCCGCCACAGCGGUACGAGUAUCUAUGAAAUAGCCGAAACCCAACU-- ---((((....((((...((.......)).(((((((((--------(....((((....)))).....))))))))))....))))....))))..-- ( -25.90, z-score = -3.90, R) >droEre2.scaffold_4690 2657362 75 + 18748788 ---AAGGUAAAUGGCAAAGAAACUGCAUCAUCAUAGAUA--------UGUCU-----------GUACGAGUAUCUAUGAAAUAGCCGAAACCCAACU-- ---..(((...((((...((.......)).(((((((((--------(.((.-----------....))))))))))))....))))..))).....-- ( -17.70, z-score = -2.85, R) >consensus ___AUGAUAAAUGGCAAAGAAACUGCAUCAUCAUAGAUA________UGUCUCCGCCA_____GUACG_GUAUCUAUGAAAUAGCCGAAACCCAAGU__ ...........((((...((.......)).(((((((((...............................)))))))))....))))............ (-11.68 = -11.68 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:39 2011