| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,280,919 – 5,281,038 |
| Length | 119 |
| Max. P | 0.873863 |
| Location | 5,280,919 – 5,281,038 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.80 |
| Shannon entropy | 0.42698 |
| G+C content | 0.53477 |
| Mean single sequence MFE | -41.83 |
| Consensus MFE | -23.55 |
| Energy contribution | -27.39 |
| Covariance contribution | 3.84 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5280919 119 + 22422827 GCAUGCUACGGCAUUUAGUGGCCACAUCUCUAGGGCUUCAGGUGGCAAGCCUCUUCAGGUGGAACAGCAGGCUAUCACGGGGAAGCUCUCUCUGCUGGGCCAUUUU-AGUCGAUUUGCAU ..((((..((((....(((((((.(((((..(((((((........))))).))..)))))...(((((((((.((....)).))).....)))))))))))))..-.))))....)))) ( -42.50, z-score = -1.28, R) >droEre2.scaffold_4690 2638297 117 + 18748788 GCAUGCUUCAGCAUUUAGUGGCCACAUCUCUAGGGCUUCAGGUGGUAAGCCUCUGCAGGUGGAACAGCGGGUUAUCACGGGGAAACUCUC--UGUUGGGCCAUUUU-AGUCGAUUUGCAU ..((((.((.((....(((((((.(((((.((((((((........))))).))).)))))...((((((((....))(((....))).)--))))))))))))..-.)).))...)))) ( -41.20, z-score = -1.86, R) >droYak2.chrX 18585174 117 - 21770863 GCAUGCUUCAGCAUUUAGUGGCCACAUCUCUAGGGCUUCAGGUGGUAAGCCUCUUCAGGUGGAACAGCGGGUUAUCACGGGGAAGCUCUU--UGUUGGGCCAUUUU-AGUCGAUUUGCAU ..((((.((.((....(((((((.((.(...((((((((..(((((((.((.((((.....))..)).)).)))))))...)))))))).--.).)))))))))..-.)).))...)))) ( -42.10, z-score = -2.60, R) >droSec1.super_4 4708439 117 - 6179234 GCAUGCUUCGGCAUUUAGUGGCCACAUCUCUAGGGCUUCAGGUGUUAAGCCUCUUCAGUUGGAACAGCAGGUUAUCACGGGGAAGCUCUC--UGUUGGGCCAUUUU-AGUCGAUUUGCAU ..((((.(((((....(((((((.((.(...((((((((..(((...(((((((((.....))..)).)))))..)))...)))))))).--.).)))))))))..-.)))))...)))) ( -41.80, z-score = -2.72, R) >droSim1.chrX_random 1822371 117 + 5698898 GCAUGCUUCGGCAUUUAGUGGCCACAUCUCUAGGGCUUCAGGUGGUAAGCCUCUUCAGGUGGAACAGCAGGUUAUCACGGGGAAGCUCUC--UGUUGGGCCAUUUU-AGUCGAUUUGCAU ..((((.(((((....(((((((.((.(...((((((((..(((((((.(((((((.....))..)).))))))))))...)))))))).--.).)))))))))..-.)))))...)))) ( -44.50, z-score = -3.00, R) >dp4.chrXL_group1e 10873744 93 + 12523060 --------------AGAGUGGAUG-GCAGCCAGCG----GAGUGAUGGGGCCCCCAGGUGGGGAGUGCGGGGCA------GACAGCUCUC--CGAUGGCCCUUUUCCAGUCAUCCUGCAU --------------...(((((((-((.(....)(----(((....(((((((((....))).....(((((.(------(....)))))--))..)))))).)))).))))))).)).. ( -38.90, z-score = 0.11, R) >consensus GCAUGCUUCGGCAUUUAGUGGCCACAUCUCUAGGGCUUCAGGUGGUAAGCCUCUUCAGGUGGAACAGCAGGUUAUCACGGGGAAGCUCUC__UGUUGGGCCAUUUU_AGUCGAUUUGCAU ((((((....))))..(((((((........((((((((..((((((.((((((...........)).))))))))))...))))))))........)))))))............)).. (-23.55 = -27.39 + 3.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:35 2011