Locus 13241

Sequence ID dm3.chrX
Location 5,279,230 – 5,279,323
Length 93
Max. P 0.989870
window18215 window18216

overview

Window 5

Location 5,279,230 – 5,279,323
Length 93
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.45
Shannon entropy 0.33679
G+C content 0.29978
Mean single sequence MFE -19.95
Consensus MFE -12.98
Energy contribution -13.02
Covariance contribution 0.03
Combinations/Pair 1.24
Mean z-score -1.61
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.596195
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 5279230 93 + 22422827
-------AUUAAAUUUGUUUGUGGAUUUACCACGUUCCUUAUGUUU---UUCUUGUUGUUGUUGCUGUUUAGUUUUGGGAAACGAAACAAAACAAGAAAAAUU
-------.........(..(((((.....)))))..).....((((---((((((((.(((((..(((((.........))))).))))))))))))))))). ( -21.40, z-score =  -2.16, R)
>droEre2.scaffold_4690 2636580 93 + 18748788
-------AUUCAAUUUGUUUGUGGACUUACCACGUUCCUUAAGUUC---UUCUUGUUGUUGUUGCUGUUUAGUUUUGGGAAACGAAACAAAACAAGAAAAAUG
-------.........(..(((((.....)))))..).....(((.---((((((((.(((((..(((((.........))))).))))))))))))).))). ( -18.60, z-score =  -0.70, R)
>droYak2.chrX 18583365 90 - 21770863
-------AUUCAAUUUGUUUGUGGAUAUACCACGAUCCUUAUGUUU---UUCUUGUUGUUG---CUGUUUAGUUUUGGGAAACGAAACAAAACAAGAAAAAUU
-------...........((((((.....)))))).......((((---((((((((....---.(((((.((((....)))).))))).)))))))))))). ( -21.10, z-score =  -2.25, R)
>droSec1.super_4 4706769 93 - 6179234
-------AUUAAAUUUGUUUGUGGACUUACCACGUUUCUUAUGUUU---UUCUUGUUGUUGUUGCUGUUUAGUUUUGGGAAACGAAACAAAACAAGAAAAAUG
-------.............((((.....)))).........((((---((((((((.(((((..(((((.........))))).))))))))))))))))). ( -21.50, z-score =  -2.13, R)
>droSim1.chrX_random 1819881 93 + 5698898
-------AUUAAAUUUGUUUGUGGACUUACCACGUUCCUUAUGUUU---UUCUUGUUGUUGUUGCUGUUUAGUUUUGGGAAACGAAACAAAACAAGAAAAAUG
-------.........(..(((((.....)))))..).....((((---((((((((.(((((..(((((.........))))).))))))))))))))))). ( -22.00, z-score =  -2.23, R)
>droAna3.scaffold_13117 2732544 103 + 5790199
UUUUCUGUUGUUCUCUGAUUUCAAGUUAUAUAAAGUUUAUAUUUUUGAAUUCUUGUUGUUGUUGCUGUUCAGUUCUGGGAAACAAAAAAAAACGAAAAACAAA
.....((((.(((...((.((((((..(((((.....))))).)))))).))..(((.(((((....((((....)))).))))).....)))))).)))).. ( -15.10, z-score =  -0.17, R)
>consensus
_______AUUAAAUUUGUUUGUGGACUUACCACGUUCCUUAUGUUU___UUCUUGUUGUUGUUGCUGUUUAGUUUUGGGAAACGAAACAAAACAAGAAAAAUG
...................(((((.....)))))...............((((((((((....))......((((((.....))))))..))))))))..... (-12.98 = -13.02 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 5,279,230 – 5,279,323
Length 93
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.45
Shannon entropy 0.33679
G+C content 0.29978
Mean single sequence MFE -18.37
Consensus MFE -13.12
Energy contribution -12.51
Covariance contribution -0.61
Combinations/Pair 1.27
Mean z-score -2.65
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.39
SVM RNA-class probability 0.989870
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 5279230 93 - 22422827
AAUUUUUCUUGUUUUGUUUCGUUUCCCAAAACUAAACAGCAACAACAACAAGAA---AAACAUAAGGAACGUGGUAAAUCCACAAACAAAUUUAAU-------
..(((((((((((((((((.((((....)))).)))))).......))))))))---)))..........((((.....)))).............------- ( -18.61, z-score =  -3.21, R)
>droEre2.scaffold_4690 2636580 93 - 18748788
CAUUUUUCUUGUUUUGUUUCGUUUCCCAAAACUAAACAGCAACAACAACAAGAA---GAACUUAAGGAACGUGGUAAGUCCACAAACAAAUUGAAU-------
..(((((((((((((((((.((((....)))).)))))).......))))))))---)))..........((((.....)))).............------- ( -18.71, z-score =  -1.78, R)
>droYak2.chrX 18583365 90 + 21770863
AAUUUUUCUUGUUUUGUUUCGUUUCCCAAAACUAAACAG---CAACAACAAGAA---AAACAUAAGGAUCGUGGUAUAUCCACAAACAAAUUGAAU-------
..(((((((((((((((((.((((....)))).))))))---....))))))))---)))..........((((.....)))).............------- ( -19.60, z-score =  -3.31, R)
>droSec1.super_4 4706769 93 + 6179234
CAUUUUUCUUGUUUUGUUUCGUUUCCCAAAACUAAACAGCAACAACAACAAGAA---AAACAUAAGAAACGUGGUAAGUCCACAAACAAAUUUAAU-------
..(((((((((((((((((.((((....)))).)))))).......))))))))---)))..........((((.....)))).............------- ( -18.61, z-score =  -3.27, R)
>droSim1.chrX_random 1819881 93 - 5698898
CAUUUUUCUUGUUUUGUUUCGUUUCCCAAAACUAAACAGCAACAACAACAAGAA---AAACAUAAGGAACGUGGUAAGUCCACAAACAAAUUUAAU-------
..(((((((((((((((((.((((....)))).)))))).......))))))))---)))..........((((.....)))).............------- ( -18.61, z-score =  -2.73, R)
>droAna3.scaffold_13117 2732544 103 - 5790199
UUUGUUUUUCGUUUUUUUUUGUUUCCCAGAACUGAACAGCAACAACAACAAGAAUUCAAAAAUAUAAACUUUAUAUAACUUGAAAUCAGAGAACAACAGAAAA
((((((.(((((((..(((((.....)))))..))))..............((.(((((..(((((.....)))))...))))).))...))).))))))... ( -16.10, z-score =  -1.61, R)
>consensus
CAUUUUUCUUGUUUUGUUUCGUUUCCCAAAACUAAACAGCAACAACAACAAGAA___AAACAUAAGGAACGUGGUAAAUCCACAAACAAAUUUAAU_______
.....((((((((((((((.((((....)))).)))))).......))))))))................((((.....)))).................... (-13.12 = -12.51 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:17:28 2011